BAC Information

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BAC

Clone NameMSMg01-408O23
Chromosome2 (Build37)
Map Location 134,085,888 - 134,086,306
singlet/doubletsinglet
Overlap genenone
Upstream geneA430048G15Rik, Bmp2
Downstream geneHao1, Txndc13, LOC627897, LOC433478, Plcb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408O23.T7 (MSMg01no408_o23.b1)MSMg01-408O23.TJ (MSMg01no408_o23.g1)
ACCAG506538AG506539
length799770
length of high quality
(start - end)		412 (45 - 456)419 (71 - 489)
definitionCHROMAT_FILE: MSMg01no408_o23.b1 PHD_FILE: MSMg01no408_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:06 2005CHROMAT_FILE: MSMg01no408_o23.g1 PHD_FILE: MSMg01no408_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGATTGGATGAGGTGGGGTGGAGCTAGAAGAAAGTGAGTCAGAGCG
AATATAGTTTTTAGCCCTTGCCCTGAGTAGAAGTAGTAGTAAGAGAAGCT
GTTGTAATAGGAGTTCAGCCCTTGCTGCAAGTGGTAGTAGAAGAAGCTTC
TGGAGAAGAGAGCTATAAAGGAAAAAGCCCGAAGTAAAAGAACCCGCCTT
GGTGTCCGTGTCATTTGTGTCGCCGCCGGCTCGAAGGACCTGTGGCACTT
TCCATTTTTCAGATTGATGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTCTCTC
TCTCCAGNCTCTCTTTCTCTCTCTCTCTCTCCTATCTCCCTCTCTCTATT
TCCCCCTTTCTCTCTCTGTCTCTCTCCTGGCTTTCTTTTTTTTTCCCCCC
CTCTCCCTNTTTTTATTTCCCTTTCCCCCTGCTATAGTCCCCCTGGCCCC
GGCTCCTGTCCCTGGCTCTTGTTTCGTGGTCTTCTCTTTTTCTTTCCTCC
CCCCTTTCTGGCCCTGTTTTTGGGTGGTGGNTTTGTTTTGTTTTCATTCC
CGGGGTGGGGTTGTTTTAGTGTGTGCCCGTTTTTCGCGTGGGCGGTGTGG
TTGCTGTCTTCGGCTGCTTCCTTGCTTTTTTTCTCCTTTTCTGGCCCGN

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTATGAATATGACAACTTTTTTTAAAAAA
TTGGGATAAAAATGTGAAATATAGGAATTGGAAGTCTATGTAAATGAAGT
AAAATCAGTAACATTATGTATTACATGACTTATTTATATTTGTGGAAAGG
AGAAAAATAACATTTCAGAAGTCACAGGTGATACAATTGAATACAGAGCA
ATATGAGGCTAAGCCCACTTTTACCGAAGAATTAAATGATGGGGTCATAG
TTCAGAAGACTGAGATTGATACTAAAGCAGCTACACTTTGTTGATAGGAA
TTAGAAATTCTTACAGACTTTTGAATCATTAAGTGTTATGAAAAATATTA
AATATTGTCTGCAGCATTGCTTCACTGTTCAGGGTTCAAACCAAACTCAA
AAGAATTCTGGCTCTAACACCTGGTACTTTAGCATCTAATATTGAATTTC
CCTCACAGTCCACCCAATGGAAAGTGCATTTGGGCAAATATAGATTCTTG
AACGTGTAAAACATAAATGATACACTTCTTCTAGGGACATTTTTCTGAAC
CACCGAGAGGCGGGGTGAAGGTATCAAAAAAGCCCTCTGAGAAGAATGAA
CCCCCTGCCCTGGGCAAAATGAAGAAGGCCTCCGGTTCCTAACCTGAAAT
GGAGGAATTCTCCCCTTGGGAATATTTCCCCCATTTACCCTTTACCAAAG
GGGCTCCCCCACCCCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_o23.g1 MSMg01no408_o23.g1 CHROMAT_FILE:
MSMg01no408_o23.g1 PHD_FILE: MSMg01no408_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:06 2005
         (419 letters)



>mm_chr2_134085688_134086506
          Length = 819

 Score =  735 bits (380), Expect = 0.0
 Identities = 410/420 (97%), Gaps = 2/420 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatgaatatgacaac-tttttttaaaaaattgggataaaaatgtgaaatataggaatt 59
           |||||||||||| |||| ||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 201 actatgaatatgccaacttttttttaaaaaa-tgggataaaaatgtgaaatagaggaatt 259

                                                                       
Query: 60  ggaagtctatgtaaatgaagtaaaatcagtaacattatgtattacatgacttatttatat 119
           ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 260 ggaagtctatgtaaatgaagtaaaatcagtagcattatgtattacatgacctatttatat 319

                                                                       
Query: 120 ttgtggaaaggagaaaaataacatttcagaagtcacaggtgatacaattgaatacagagc 179
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttgtggaaaggaggaaaataacatttcagaagtcacaggtgatacaattgaatacagagc 379

                                                                       
Query: 180 aatatgaggctaagcccacttttaccgaagaattaaatgatggggtcatagttcagaaga 239
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatatgaggctaagcccacttttgccgaagaattaaatgatggggtcatagttcagaaga 439

                                                                       
Query: 240 ctgagattgatactaaagcagctacactttgttgataggaattagaaattcttacagact 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgagattgatactaaagcagctacactttgttgataggaattagaaattcttacagact 499

                                                                       
Query: 300 tttgaatcattaagtgttatgaaaaatattaaatattgtctgcagcattgcttcactgtt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttgaatcattaagtgttatgaaaaatattaaatattgtctgcagcattgcttcactgtt 559

                                                                       
Query: 360 cagggttcaaaccaaactcaaaagaattctggctctaacacctggtactttagcatctaa 419
           ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 560 cagtgttcaaaccaaactcaaaagagttctggctctaacacctggtactttagcatctaa 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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