Query= MSMg01no409_f14.b1 MSMg01no409_f14.b1 CHROMAT_FILE:
MSMg01no409_f14.b1 PHD_FILE: MSMg01no409_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:40 2005
(501 letters)
>mm_chr2_123880085_123880986
Length = 902
Score = 932 bits (482), Expect = 0.0
Identities = 494/498 (99%), Gaps = 1/498 (0%)
Strand = Plus / Minus
Query: 5 gaattcagatatctattgtcttattatccacatggatctgtcaattaaacctaatgttgt 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gaattcagatatctaatgtcttattatccacatggatctgtcaattaaacctaatgttgt 478
Query: 65 taagatccagcagtatttatctgtttgccatataacatagtgttcaggacaatagggcat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 taagatccagcagtatttatctgtttgccatataacatagtgttcaggacaatagggcat 418
Query: 125 ttattgcccagtctttaaacaaatgtttcccatatt-aaaaatacaaccaaatctaaatt 183
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 417 ttattgcccagtctttaaacaaatgtttcccatattaaaaaatacaaccaaatctaaatt 358
Query: 184 aatatgctactaattgttttccaattaaaactgttatttagcaaccactactaatacact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aatatgctactaattgttttccaattaaaactgttatttagcaaccactactaatacact 298
Query: 244 gaaaagaaagaatgattacagaatttataatgaccaaagtccattgcctaaaccacactg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gaaaagaaagaatgattacagaatttataatgaccaaagtccattgcctaaaccacactg 238
Query: 304 tgagtgaactttgcagttttattgaaaaataggccaccactttgttagtgcaacacaatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tgagtgaactttgcagttttattgaaaaataggccaccactttgttagtgcaacacaatt 178
Query: 364 tcttactacagttctaaatattaaagatctatttaaacgtagtgaccatctcttatcaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tcttactacagttctaaatattaaagatctatttaaacgtagtgaccatctcttatcaaa 118
Query: 424 gaagcttctctttacagcaaatggaggccatcacagaaaagcaaacccagataaaatgcg 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 gaagcttctctttacagcaaatggaggccatcacagaaaagcaaacccagataaaatgca 58
Query: 484 gagatcgattgatcttga 501
||||||| ||||||||||
Sbjct: 57 gagatcggttgatcttga 40
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 902
Length adjustment: 10
Effective length of query: 491
Effective length of database: 892
Effective search space: 437972
Effective search space used: 437972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_f14.g1 MSMg01no409_f14.g1 CHROMAT_FILE:
MSMg01no409_f14.g1 PHD_FILE: MSMg01no409_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:41 2005
(473 letters)
>mm_chr2_123724805_123725678
Length = 874
Score = 884 bits (457), Expect = 0.0
Identities = 470/475 (98%), Gaps = 3/475 (0%)
Strand = Plus / Plus
Query: 1 aaaagagagataatgggtgttgatatttttaaagttgaattacaattctcaaattgacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagagagataatgggtgttgatatttttaaagttgaattacaattctcaaattgacta 260
Query: 61 gtagtgatggctgtatctcataatacatacataaaaatatccaactgcatattttatgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagtgatggctgtatctcataatacatacataaaaatatccaactgcatattttatgta 320
Query: 121 ttcaaaacttaataaaatataaaatacatacgtgtggatcattacagatggaagcaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 ttcaaaacttaataaaatataaaatacatacgtgtggatcattacagatggaagcgaaaa 380
Query: 181 caatgtaaaacatcttaactattatttgataaaattcaatgattttagaatttaaaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 caatgtaaaacatcttaactattatttgataaaattcaatgatttta-aatttaaaaaaa 439
Query: 241 --atcactaaaccaatagcagtatgaggtttgttcatacaaaaacagaagtatctatcaa 298
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 440 acatcactaaaccaatagcagtatgaggtttgctcatacaaaaacagaagtatctatcaa 499
Query: 299 aatatatagtaaataagaaaaaaaatcagagcccactttgaattttcacataataaaata 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aatatatagtaaataagaaaaaaaatcagagcccactttgaattttcacataataaaata 559
Query: 359 ttctcatctcaggtgttaagagagtgggataaagacaaactgagcataaagcagaaaagc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttctcatctcaggtgttaagagagtgggataaagacaaactgagcataaagcagaaaagc 619
Query: 419 ttcctatcagtgatatcaataaaggagagacaacttgtgaggcctgaaggagcga 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttcctatcagtgatatcaataaaggagagacaacttgtgaggcctgaaggagcga 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 874
Length adjustment: 10
Effective length of query: 463
Effective length of database: 864
Effective search space: 400032
Effective search space used: 400032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
