BAC Information

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BAC

Clone NameMSMg01-409I08
Chromosome2 (Build37)
Map Location 40,679,646 - 40,680,113
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409I08.T7 (MSMg01no409_i08.b1)MSMg01-409I08.TJ (MSMg01no409_i08.g1)
ACCAG506986AG506987
length785810
length of high quality
(start - end)
465 (71 - 535)248 (76 - 323)
definitionCHROMAT_FILE: MSMg01no409_i08.b1 PHD_FILE: MSMg01no409_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:54 2005CHROMAT_FILE: MSMg01no409_i08.g1 PHD_FILE: MSMg01no409_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGCATCCGCGGAAT
TCTTGAGTTTTGCCCCCCTTGTCCTTGAAACTTACCTCTCCCTGTAACCT
GTGTTATTGATACAGAACACATGTCTAAATAAGTTAAGTCTAATTGAGTA
GAAAAATGAGAAGCGCACTTAACCATAAAGAATGACGTATGCTATGGATA
CAGACTACTCCAGTGTTCTTCCTCTGCTTTAAATGCCAAAATAAAATGAA
AAAAAAAAGGTAGCAATTGGGTGAATCATGGTGTATAGGTTCAGCTTTAT
TTTAAACTTTCCCAACCTGTCTTTTTTTTTTTGAAATACATAGAAATGTT
CAATTTATATATCTTTGAACTTGAAGAAATTAATTATAAAATTACTACAG
GCTCAAAGTTAATCATTACTTTAAACTCCCAGTCTACAGAGATTCAATTA
ACTTCTGTGGAAAGATACAGTTGCTGTAAAAATTGGTAAACTAGCACCAA
CTAGTATTTTGAAAGTAGTATAATCATTCCCAATACGCAGAACTAACTGG
CACTTAGTTATACTTCTAAGTACCTGGGTGCCTCAGAAGTATCCTAAACT
AGCATTTCCTAGTTCAGCAAACATCTTTCAGTCCCCAATACCAAGAAACT
TGAGTATAGCCATACTGCCGTATGGTAATAACTTCTTATCCTTTATTTTA
TCCAAAATTTTCCCAATTTCTTTGGGGAAGATATATATAACTTTACCTCT
TAATTGGCTAAACTCCTTTATTAAATAATATTCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTAGCTCAGTACCCCATTTTA
AATAGGGTTATTTGGTTATCTGGAGTCTAACTTCTTGAGTTCTTTGTATA
TATTGGATATTAGCTCTAGAAGTGCTAATTGGAAACTCATAGTTCTGAGT
ACCTCAAAAAAGAAACAACAAAGAACATACACTGCAGCTTGACAGCACAA
CTGAAAGCTTTAGAACAAAAAGAAGTAAATAGACCCAAGAGGATTAAAAG
TCAGGAAATAATCAAACTCAGGGCTGTTTTCTTCTNAGTAGAAACAACTA
AACCAGGAGCTAGTCCTTTGAGAAAATCACCAAGATAGATAAACCCTTAG
GCAAACTAAGCAGAGGGTTCTGAGACTGTATCCAAATCATAAAAAAAAAA
ATTCATAAAAGAATAAGGGAATCATTAATATGGGAAACTGAAGAAATCTT
AATAATTCTTTCCATTCTATCNTCNCATATCCCTATTTTTCCTGGACAGG
GTGTATAATTTCGCATTGTTATTGTTACAACTTTTCTTTATGAATGTATC
CCTGTTCTCCTACTTTTTAATCTTCTGGGCCTCATTTAAACGGGTTACTA
TCTTGTCAATCCTCTTTATTTTTTTGATTTTTCCTCAATTAATTATTATC
ATCTCTCACTATATTTCTTTTCCCTTTCCTTTATTTAATATACCATTAAC
CGTTTATTATTCGATTCTCTTTAACGATTTCTGGTTCATTCATCACTTAT
TCACGAGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_i08.b1 MSMg01no409_i08.b1 CHROMAT_FILE:
MSMg01no409_i08.b1 PHD_FILE: MSMg01no409_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:54 2005
         (465 letters)



>mm_chr2_40679446_40680313
          Length = 868

 Score =  797 bits (412), Expect = 0.0
 Identities = 453/470 (96%), Gaps = 7/470 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtccttgaaacttacctctccctgtaacctgtgttattgatacagaacacatgtctaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtccttgaaacttacctctccctgtaacctgtgttattgatacagaacacatgtctaaat 260

                                                                       
Query: 61  aagttaagtctaattgagtagaaaaatgagaagcgcacttaaccataaagaatgacgtat 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 aagttaagtccaattgagtagaaaaatgagaagcgcacttaaccataaagaatgatgtat 320

                                                                       
Query: 121 gctatggatacagactactccagtgttcttcctctgctttaaatgccaaaataaaatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 gctatggatacagactactccagtgttcttcctctgctttaaatggcaaaataaaatgaa 380

                                                                       
Query: 181 aaaaaaa-----aggtagcaattgggtgaatcatggtgtataggttcagctttattttaa 235
           |||||||     |||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 381 aaaaaaataaaaaggtagcaattgggtgaatcatggt--ataggttcagctttattttaa 438

                                                                       
Query: 236 actttcccaacctgtctttttttttttgaaatacatagaaatgttcaatttatatatctt 295
           |||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||
Sbjct: 439 actttcccaacctgtcatatatattttgaaatacatagaaatgttcaatttatatatctt 498

                                                                       
Query: 296 tgaacttgaagaaattaattataaaattactacaggctcaaagttaatcattactttaaa 355
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 499 tgaacttgaagaaattaattataaaatgactacaggctcaaagttaatcattactttaaa 558

                                                                       
Query: 356 ctcccagtctacagagattcaattaacttctgtggaaagatacagttgctgtaaaaattg 415
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 559 ctcccagtctacagagattcaattaacttctgtggaaagatacagttactgtaaaaattg 618

                                                             
Query: 416 gtaaactagcaccaactagtattttgaaagtagtataatcattcccaata 465
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ataaactagcaccaactagtattttgaaagtagtataatcattcccaata 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 868
Length adjustment: 10
Effective length of query: 455
Effective length of database: 858
Effective search space:   390390
Effective search space used:   390390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)