BAC Information

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BAC

Clone NameMSMg01-409P22
Chromosome2 (Build37)
Map Location 40,033,468 - 40,033,681
singlet/doubletsinglet
Overlap genenone
Upstream geneA930041I02Rik, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1, LOC100042604
Downstream geneMagmas-ps, LOC666531, Lrp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409P22.T7 (MSMg01no409_p22.b1)MSMg01-409P22.TJ (MSMg01no409_p22.g1)
ACCAG507348AG507349
length801770
length of high quality
(start - end)
218 (55 - 272)356 (58 - 413)
definitionCHROMAT_FILE: MSMg01no409_p22.b1 PHD_FILE: MSMg01no409_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:35 2005CHROMAT_FILE: MSMg01no409_p22.g1 PHD_FILE: MSMg01no409_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTGGTGTTGTTGATAAATTGTGACAAGGTAAATATGT
AATTAGTACAAATATTTAATAAAGGTTAGTTCATGCAGACTTATTTCGTG
CTGACACCAAGTTCAAGAATAAAGGTTGTTCTCATATAAAGAAGGGGTAA
CTTTGATAGAGAAAATTTATATTTTGTAACTAGATGGATAGTGAAGAGGT
AGAAAGATTTTCTTGATGGTACNCTTTTTCAAATTCTTTTTTATATTAAA
TNCCTTTNNCAATTTTTTTTTAAACTCGCCTTGGTAAAGTTTAGTGNAAA
ACCNATTTTTTTNTTTTGCNNCACCCCCTCACTCANTTTTTGTGTTGTTG
AAAAAGNCTTTTCATTTGGGGGGGNTATGGTATCGCCNNAATAAGTGGGG
TGTGGTGTTCTCTNNTGCGGCGGTGGGNNNTGTGGGCTTCATTAAAATAT
AAGTGGGTGNCTTTTTTAATATAAAATTCAANNNNAGATCTCTTTCCNNN
ACACCATTTTTTTTTTTTTTTGTNGGAGTTCAATCGNNNNNNNNCNNNNN
CCCGCGNCCGCCCCCCTCCCTTCTTCCTCCCTCCCCGNNNCGAGTATATT
TGNTTNNCTCCCGCCGGGGACCTTTTCTTTATAAAAACANNCCCCNCNNA
ACAGTATTAACCCACCTCTCCTCCCNNNNATACACATTANNNNNNNNNNN
CTTTCCCTTTCTCTTTCACANTGGAGTAGGTACCTACTACNATTTTTCCT
G
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTTTTTTTTTTGCAGATTAACTTTTTTTTTCTTTCCATTTTT
TATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCC
CATACCCACCCACCCCCACTCCCCTACCCGCCCACTCCCCCTTTTTGGCC
CTGGCGTTCCCCTGTTCTGGGGCATATAAAGTTTGTGTGTCCAATGGGCC
TCTCTTTCCAGTGATGGCCGTCTAGGCCATCTTTTGATACATATGCAGCT
AGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGGTGATCCACCTA
TAGGGTTGCAGATCCCTTTAGCTCCTTGGGGACTTTCTCTAGCTCCTCCA
TTGGGAGCCCTGTGATTCCTCCATTAGCTGACTGTGAGCATCCACTTCTG
TGTTTGCTTAGGCCCCGGCTATTCCCCCACGAGCCAGCTTCATCTGGGGT
CTTTCCGCAAAATCCCTGCTATGGTTTGCACGGGGCCTTCGCTTGGCCGT
TGCCTATGCTGCGACTCCTCGTGTATTCTATCTACCCTCTCTCCCTCTCC
GTGTTTCTTTTCCCCCTCCGTTTCTTCTCCTCTCTGTTCCTGTGGTGTGC
GTTGCCGCTCTCTCCCGCTCTTGTTTTTTTTTTTTCTTCCTTCCTTTTTC
TCGCCTCTCTCCTGTTCTTGCTTGTTGCTCGCGCCTTTTCCCTTTCCCGG
CTATGCTTCATATTACGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_p22.b1 MSMg01no409_p22.b1 CHROMAT_FILE:
MSMg01no409_p22.b1 PHD_FILE: MSMg01no409_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:35 2005
         (218 letters)



>mm_chr2_40033264_40033881
          Length = 618

 Score =  406 bits (210), Expect = e-118
 Identities = 213/214 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggtgttgttgataaattgtgacaaggtaaatatgtaattagtacaaatattta 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggtgttggtgataaattgtgacaaggtaaatatgtaattagtacaaatattta 264

                                                                       
Query: 65  ataaaggttagttcatgcagacttatttcgtgctgacaccaagttcaagaataaaggttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataaaggttagttcatgcagacttatttcgtgctgacaccaagttcaagaataaaggttg 324

                                                                       
Query: 125 ttctcatataaagaaggggtaactttgatagagaaaatttatattttgtaactagatgga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctcatataaagaaggggtaactttgatagagaaaatttatattttgtaactagatgga 384

                                             
Query: 185 tagtgaagaggtagaaagattttcttgatggtac 218
           ||||||||||||||||||||||||||||||||||
Sbjct: 385 tagtgaagaggtagaaagattttcttgatggtac 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)