BAC Information

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BAC

Clone NameMSMg01-410D08
Chromosome2 (Build37)
Map Location 118,692,259 - 118,692,568
singlet/doubletsinglet
Overlap geneIvd
Upstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e
Downstream geneBahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410D08.T7 (MSMg01no410_d08.b1)MSMg01-410D08.TJ (MSMg01no410_d08.g1)
ACCAG507510AG507511
length7491,089
length of high quality
(start - end)		466 (57 - 522)---
definitionCHROMAT_FILE: MSMg01no410_d08.b1 PHD_FILE: MSMg01no410_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:52 2005CHROMAT_FILE: MSMg01no410_d08.g1 PHD_FILE: MSMg01no410_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGGGGGNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCACCTGATTCCTACCAAATGGCTGAGAAGCACC
TGAAAAACTGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGCCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTTAGAAAATTGGACATGGTACTACCGTTATGATCCCGCAATAC
CTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGAACAA
TCCCTCAATTATTAAAGGTGATTTTTAAAATGCAGCCCTACATAAAATTA
CTCCGTGTCTTCCTGCAGTACCCAGAGTGACACAGAAGCCCCTAAGCCAG
GCCACATGGGCTATCCCCCAACTTCCCCCTGTGTCTTTCTGGTACCCACT
CACTGCTCTCCCGGGCTCTCCCCTTCCATTCTTGCACTGCCGTTCATCTC
CTGAGACTCTTATTATAGAAAATCTCACTGGGACTATAACGTCCCCTGGC
CGGGACATTACATTTCTGCTTCTAACTTCTTAAGCCTCCCGCCCGCAATC
CCTTATGCTCTTTTACCACCCCTTTCTGCTAATTCAAACCGTTAGGGGG

TCGACACAACAGAGAAGGGGGGAAGAGGGTGGCCGTGTGTTTCGAAAGAA
AGGGGGAAAAGCTACAGTATCGCGCGGAATGCCGTGCACGCGCTTACGGC
TAATAGGGGAAATAGAGATTATATGTTGCCTGTTGGTTACAAAGAATAAG
AACACTCCTCGTGGTGGGGTGGCATCACTGTAAACAAATAACATCCCAGT
CAGGATTCTGTACGGCGTTGACCCCTTTCAAGACACATATTCACAAAGCA
GAATCACCTTGTTGAGCTACATATAGCGCGGTCTTACTACCAGAGCAATC
GCACGAGATGTAAGAGCAGAGAACAGAAGGATCCGGCAGTTTAATACAGC
AAACGGTATCTTCTAAAACACGATGTAGATTTATAATTGAATATTTAGAT
ATCGACAATGAAAAAGGAATAGAAGGATGCCGTATGGGAGCCGTTGCGTC
ACTGCTGTATAAACCATTCCTTTAGGCTGTTCACGAGTGCTACTACACAA
GTTCGACTCATATATAACAGGTTATATCACTACGTTGGAACCGATTGCAC
TATCGACGTCGTTTAACCGTACACACATAGACACGCCTAACTTGTATTCA
TCCATCCCGACCACGATATCTCTCGCGCCCGTCTTTCATCCCCGAACTCG
CTTATGTACGTCGCCATGCGCATATCCGTATTCACCGATTTCGCCTATCG
CGCGCTTCTTTTCTCTCCCACAAGTCGTTTGCTATTTTACGACACTCACC
ACTACTACGTCTCTATCTCTCTCCATGCCGCGTTCATTCGTCGCTTAGTA
CACACTCCGCACAATAGCATCAGATAATTACGAAAGGACACAGAAGCAGC
ACTCTACACTGTCGACAGAGAGTTTCTGAGGCATCGCACCGACTCTCGCG
TATGCGCATACTCCCACCACTTTCACCTTCCCTTCTTGTATGTGCGACCG
CTTAAACACTTAGACCCGATACCGTACGTACCCGTCTNCAACACCACTGT
TCTTCGTTCGCCGACGGTTCCTGTCCCGGTTCCCACTATGATCCCGGCGT
AGTTATGTTAGTCGTTCAACGCAAAACATAATTCGTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_d08.b1 MSMg01no410_d08.b1 CHROMAT_FILE:
MSMg01no410_d08.b1 PHD_FILE: MSMg01no410_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:52 2005
         (466 letters)



>mm_chr2_118691703_118692568
          Length = 866

 Score =  571 bits (295), Expect = e-167
 Identities = 307/311 (98%), Gaps = 1/311 (0%)
 Strand = Plus / Minus

                                                                       
Query: 156 gatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaagc 215
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 gatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaagc 807

                                                                       
Query: 216 ttgtacaaccactctggaaatcagtctggcggttccttagaaaattggacatggtactac 275
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ttgtacaaccactctggaaatcagtctggcggttccttagaaaattggacatggtactac 747

                                                                       
Query: 276 cgttatgatcccgcaatacctctcctgggcatatatccagaagatgtcccaaccggtaag 335
           ||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cg-gaggatcccgcaatacctctcctgggcatatatccagaagatgtcccaaccggtaag 688

                                                                       
Query: 336 aaggaacaatccctcaattattaaaggtgatttttaaaatgcagccctacataaaattac 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aaggaacaatccctcaattattaaaggtgatttttaaaatgcagccctacataaaattac 628

                                                                       
Query: 396 tccgtgtcttcctgcagtacccagagtgacacagaagcccctaagccaggccacatgggc 455
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 627 tccgtgtcttcctgcagtacccagagtgacacagaagcccctaagccagcccacatgggc 568

                      
Query: 456 tatcccccaac 466
           |||||||||||
Sbjct: 567 tatcccccaac 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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