Query= MSMg01no410_m06.b1 MSMg01no410_m06.b1 CHROMAT_FILE:
MSMg01no410_m06.b1 PHD_FILE: MSMg01no410_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:36 2005
(247 letters)
>mm_chr2_90531064_90531711
Length = 648
Score = 462 bits (239), Expect = e-135
Identities = 245/247 (99%), Gaps = 1/247 (0%)
Strand = Plus / Minus
Query: 1 atctgttatagtaaaaataaatgttttatt-aaaaaactatctatcctgttatatattta 59
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 447 atctgttatagtaaaaataaatgttttattaaaaaaactatctatcctgttatatattta 388
Query: 60 tcctgttaaaaatttatcctgttatatatctatcattacaaaagtgtatactaagtagca 119
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 387 tcctgttaaaaatttatcctgttatatatctatcattacaaaagtatatactaagtagca 328
Query: 120 aagtaaaatgtgtactgttgaatgtagcccaaacaaaacaacaaaatccagaaaattcca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aagtaaaatgtgtactgttgaatgtagcccaaacaaaacaacaaaatccagaaaattcca 268
Query: 180 gttgagtgcatgagtttctcaaatgacttgtgacaaaaagtgagtttattccactttttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gttgagtgcatgagtttctcaaatgacttgtgacaaaaagtgagtttattccactttttt 208
Query: 240 ccttctg 246
|||||||
Sbjct: 207 ccttctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 648
Length adjustment: 9
Effective length of query: 238
Effective length of database: 639
Effective search space: 152082
Effective search space used: 152082
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no410_m06.g1 MSMg01no410_m06.g1 CHROMAT_FILE:
MSMg01no410_m06.g1 PHD_FILE: MSMg01no410_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:36 2005
(274 letters)
>mm_chr2_90355534_90356207
Length = 674
Score = 491 bits (254), Expect = e-143
Identities = 271/280 (96%), Gaps = 7/280 (2%)
Strand = Plus / Plus
Query: 1 ccatgaatccagccctctgtctagcttaggaaacagaaaaatcttgagttcagacccaga 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatgaatccagccctccgtctagcttaggaaacagaaaaatcttgagttcagacccaga 260
Query: 61 cccatcccttgcacctattttcttcccagtcttagtgcctgaggccctgccccaccacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccatcccttgcacctattttcttcccagtcttagtgcctgaggccctgccccaccacct 320
Query: 121 ccaaggcaatgtgaatttgtgcacaagatttaagagaaggcaggaacctttcttgttagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaggcaatgtgaatttgtgcacaagatttaagagaaggcaggaacctttcttgttagc 380
Query: 181 agtggggcccacctcagagaaagcaggcattctcacattctgcttttcctgcaaagcata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtggggcccacctcagagaaagcaggcattctcacattctgcttttcctgcaaagcata 440
Query: 241 ttggttgtgagtgtgtgtgtg------tgtgtgtgtgtgt 274
|||| ||||||||||||||| |||||||||||||
Sbjct: 441 ttggg-gtgagtgtgtgtgtgcgcgcgtgtgtgtgtgtgt 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
