CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAACTGACGAATACTGAATGACTGAGAAGCACCTAAAAAAAATAAT
GTATTGTTTTTAGGCTTTGGCAATTTAACAACAGCAGCAGCAACGACAAC
AACAACAACATGTGTGTAGCATGTTTAATAATGCTGAAGTATATTATAGT
TTTCAGCATTCTTTATGCTTTATTTAAATAATCATTATTAATGAAAAAAA
TCATACAACAGATACTCTCACAAGAGCCAGTATACAAGCATCTGAATGTG
TATGTGTGTGTGTGTGTGTGTGAACACATATATGTGTATACACACAGACA
TGTGTATGCATTCACTTTCGTTACTTATAATGTGCAGTGATTTATTTCAT
AAATATAATCGATTAACCTTATGAAATGATCTATAATGTCACAACTATTT
ATACTGATCATTTATGATACATATACCTATATTATTTAGTGTACATGCAG
TATAGACTCAGGTAGAACATTTTACCTTCATTTATTGCTTCTTTATGGCA
AGACAGTACACAATTGTTCTCTATAGATCTGCTGCATAGCAAGTAACACA
CCAGAACTTCTGAATTCTATCTAGATGTTTCTTAGTAATCTTTGATCAAA
ATGGGATTTTTATTTTTTACATCTTCATTTGAACAATGAACTAGTCTAAA
TTTATCATGGACATAGAGATAAAAATAATTGGTGAATACAAAAATTCTTT
GTATATTAGGAATCTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTTCCTCTTGGAGGATTTTA
TTTTAATGGGTATGAAGTGTCCCTCATTTTCTTTTTTGATAACATTGGGT
TGGAAGTCAATTTTATTCGATATTAGAATGGCTACTCCAGCTTGTTTCTT
CATACCATTTGTTTGGAAAATTGTTTTCCAGCCTTTCACTCTGAGGTAGT
GTCTGTCTTTTCCCCTGAGATGGGTTTCCTGTAAGCAGCAAAATGTTGGG
TCCTGTTTGTGTAGCCAGTCTGTTAGTCTATGTCTTTTTATTAGGGAATT
GAGACCATTGATATTAAGAGATATTAAGGAAAAGTAATTGTTGCTTCCTT
TTATTTTTGTTGTTAGAGTTGGCATTCTGTTCTTATGGATGTCTTCTTTT
TGGTTTGTTGAGGGATTACTTTCTTGCTTTTTCTAAGGCGTGATTTCCGT
CCCTGTATTGGTTTTTTTCCTGCTATTATCCGCTGAAAGGCTGGACTCAT
GCAAAGATAACGTGTGATATTGGCTTTGTCTGGCAATACTCTGTTTTCCC
CCTCTATGGCACACCCGACAGTTTACCCTCCGTTTCGCCCCCCTCGTGCT
CGCCCTTTCTTGTTTTCTTCCATGTCCTTCCTATTTCTTTTGTCTCGCGC
GCTTTCCTCCTTTTCTTATTCCTCTTGTCCCGTACCCTCTTGTACGCCCT
TTTTGATTAATGACCTTCCCTATCCCGCCCTTTCTTTCATTTTTT

Query= MSMg01no411_a20.b1 MSMg01no411_a20.b1 CHROMAT_FILE:
MSMg01no411_a20.b1 PHD_FILE: MSMg01no411_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:58 2005
         (585 letters)



>mm_chr2_39366447_39367430
          Length = 984

 Score =  965 bits (499), Expect = 0.0
 Identities = 558/585 (95%), Gaps = 16/585 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaactgacgaatactgaatgactgagaagcacctaaaaaaaataatgtattgt 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctcaactgaggaatactgaatgactgagaagcacctaaaaaaaataatgtattgt 261

                                                                       
Query: 65  ttttaggctttggcaatttaacaacagcagcagcaacg---acaacaacaacaacatgtg 121
           |||||||||||| ||||||||| |||||||||||||||   |||||||||||||||||||
Sbjct: 262 ttttaggctttgacaatttaaccacagcagcagcaacgacaacaacaacaacaacatgtg 321

                                                                       
Query: 122 tgtagcatgtttaataatgctgaagtatattatagttttcagcattctttatgctttatt 181
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 322 tgtagcatgtttaataatgctgaagtgtattatagttttcagcattctttatgctttatt 381

                                                                       
Query: 182 taaataatcattattaatgaaaaaaatcatacaacagatactctcacaagagccagtata 241
           |||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 382 taaataataattattaatg-aaaaaatcatacaatagatactctcacaagagccagtata 440

                                                                       
Query: 242 caagcatctgaatgtgtatgtgtgtgtgtgtgtgtgtgaacacatatatgtgtatacaca 301
           ||||||||||||||||||          ||||||||||| ||||||||||||||||||||
Sbjct: 441 caagcatctgaatgtgta----------tgtgtgtgtgagcacatatatgtgtatacaca 490

                                                                       
Query: 302 cagacatgtgtatgcattcactttc-gttacttataatgtgcagtgatttatttcataaa 360
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 491 cagacatgtgtatgcattcactt-ctgttacttataatgtgcagtgatttatttcataaa 549

                                                                       
Query: 361 tataatcgattaaccttatgaaatgatctataatgtcacaactatttatactgatcattt 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tataattgattaaccttatgaaatgatctataatgtcacaactatttatactgatcattt 609

                                                                       
Query: 421 atgatacatatacctatattatttagtgtacatgcagtatagactcaggtagaacatttt 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 610 atgatacatatacctatattatttagtgtacatacagtatagactcaggtagaacatttt 669

                                                                       
Query: 481 accttcatttattgcttctttatggcaagacagtacacaattgttctctatagatctgct 540
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 670 accctcatttattgcttctttatggcaagacagtacacaattgttctctatagttctgct 729

                                                        
Query: 541 gcatagcaagtaacacaccagaacttctgaattctatctagatgt 585
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gcatagcaagtaacacaccagaacttctgaattctatctagatgt 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 984
Length adjustment: 10
Effective length of query: 575
Effective length of database: 974
Effective search space:   560050
Effective search space used:   560050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)