Query= MSMg01no411_f04.b1 MSMg01no411_f04.b1 CHROMAT_FILE:
MSMg01no411_f04.b1 PHD_FILE: MSMg01no411_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:19 2005
(529 letters)
>mm_chr2_103354425_103355354
Length = 930
Score = 661 bits (342), Expect = 0.0
Identities = 395/428 (92%), Gaps = 26/428 (6%)
Strand = Plus / Minus
Query: 113 aagaagtgctttaaactttagaaagtactttaatgtgtattattctatattgtcttggat 172
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 930 aagaagtgctttaaactttataaagtactttaatgtgtattattctatattgtcttggat 871
Query: 173 ccgtggtattcagcagcgctttctgccgtgatgggaatgccaagactacaccagtcacat 232
||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 870 ccgtggtattcagcagcgctttctgccatgatgggaatgc---------------cacat 826
Query: 233 gggcagcacagtggagggactgggctttcaaacacaaacccaatatatatacaggttctc 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 gggcagcacagtggagggactgggctttcaaacacaaacccaatatatatacaggttctc 766
Query: 293 atgaa----------acacacacacacacacacactggtgattaaaagaatgtct-aaaa 341
||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 765 atgaaacacacacacacacacacacacacacacactggtgattaaaagaatgtctaaaaa 706
Query: 342 aatgtataaacttacaaatcctattaaagcttgtttgttttattttacaaaggatacttc 401
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 705 aatgtagaaacttacaaatcctattaaagcttgtttgttttattttacaaagggtacttc 646
Query: 402 taccagtggactaaatggatgcttgggcaaaaatagaggatatctactatgaaactaact 461
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 645 taccagtggactaaatggatgcttgggcaaaaatagaggatatctactatgaaactaagt 586
Query: 462 ccatgtagtagaccatgtattccaaaatgtaataacaaattttagtccattgattgacaa 521
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 585 ccatgtggtagaccatgtattccaaaatgtaataaaaaattttagtccattgattgacaa 526
Query: 522 aatttggt 529
||||||||
Sbjct: 525 aatttggt 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 930
Length adjustment: 10
Effective length of query: 519
Effective length of database: 920
Effective search space: 477480
Effective search space used: 477480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_f04.g1 MSMg01no411_f04.g1 CHROMAT_FILE:
MSMg01no411_f04.g1 PHD_FILE: MSMg01no411_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:19 2005
(427 letters)
>mm_chr2_103194145_103194976
Length = 832
Score = 760 bits (393), Expect = 0.0
Identities = 421/433 (97%), Gaps = 7/433 (1%)
Strand = Plus / Plus
Query: 1 catgatgaggttgggggcaggaagttgaggaggatgagggagagcaaagggaatac---- 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgatgaggttgggggcaggaagttgaggaggatgagggagagcaaagggaatacaatg 260
Query: 57 -aattgttatgacaaatgaggttatcaacaggcgatgtcactacatgaaggaggggcaga 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattgttatgacaaatgaggttatcaacaggcgatgtcactacatgaaggaggggcaga 320
Query: 116 gtggacctgaggtgaggaagagcctgtgagtgaacacattcttatttttaatgggaatat 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggacctgaggtgaggaagagcctgtgagtgaacacattcttatttttaatgggaatat 380
Query: 176 actcaagacatactggataagaaatacaaaatgccagagaagtcacgtaaacatcttact 235
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 actcaagacatactggataagaaatacaaaatgccagagaagtcatgtaaacatcttact 440
Query: 236 gagaagtatggtaagga-tgctagccagagccagaggagttagagctaacgcctgcgaag 294
||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaagtatggcaaggact-ctagccagagccagaggagttagagctaacgcctgcgaag 499
Query: 295 gagcttatcaaaggctgtgttactatttgaaggcttaaactacacatgtgtgtttatttg 354
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagcttatgaaaggctgtgttactatttgaaggcttaaactacacatgtgtgtttatttg 559
Query: 355 attaaaatataataaggtaggagttcgaaaggtagctcagtcagtaaatgtttgccttgg 414
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 attaaaatatagtaaggtaggagttcgaaaggtagctcagtcagtaaatgtttgccttgg 619
Query: 415 gagtgagagaacc 427
|||||||||||||
Sbjct: 620 gagtgagagaacc 632
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 832
Length adjustment: 9
Effective length of query: 418
Effective length of database: 823
Effective search space: 344014
Effective search space used: 344014
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
