Query= MSMg01no411_f08.b1 MSMg01no411_f08.b1 CHROMAT_FILE:
MSMg01no411_f08.b1 PHD_FILE: MSMg01no411_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:20 2005
(489 letters)
>mm_chr2_38938163_38939051
Length = 889
Score = 930 bits (481), Expect = 0.0
Identities = 487/489 (99%)
Strand = Plus / Minus
Query: 1 tgatcctttgctgtagaagacttcctggtttttatagatttaaaaattggttcggatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tgatcctttgctgtagaagacttcctggtttttatagatttaaaaattggttcggatttt 630
Query: 61 tcttgtcacacccatatagcatgatttttctacatctttgattacataccttaggcatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tcttgtcacacccatatagcatgatttttctacatctttgattacataccttaggcatct 570
Query: 121 ttgaagaccgtagaactcctggcctaggaaacttctcaggctgtgtgtaaaagttaggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttgaagaccgtagaactcctggcctaggaaacttctcaggctgtgtgtaaaagttaggat 510
Query: 181 acttgaattgacacaacttcaaaggcttttttttcttgttttgttttgatttctgtgaat 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 509 acttgaattgacacaacttcaaaggcttttttttcttgttttgttttgttttctgtgaat 450
Query: 241 ttttatcttatacttttaaaatacaaacttcagaattcaccagaaggacaagtttgtttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttttatcttatacttttaaaatacaaacttcagaattcaccagaaggacaagtttgtttg 390
Query: 301 ggccattttgccagtggctacaaagagaagcctttttacccttagtactttgtcctcaat 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 389 ggccattttgccagtggctacaaagggaagcctttttacccttagtactttgtcctcaat 330
Query: 361 aggttacacataagatccatttctaactcccagtcatttcctaggtcaaatgttaagtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aggttacacataagatccatttctaactcccagtcatttcctaggtcaaatgttaagtga 270
Query: 421 aacttcacactgtcttagcagtacttgaactgtttcactgtctccctgactgtgaatagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aacttcacactgtcttagcagtacttgaactgtttcactgtctccctgactgtgaatagt 210
Query: 481 gccgatgtc 489
|||||||||
Sbjct: 209 gccgatgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_f08.g1 MSMg01no411_f08.g1 CHROMAT_FILE:
MSMg01no411_f08.g1 PHD_FILE: MSMg01no411_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:20 2005
(501 letters)
>mm_chr2_38737669_38738568
Length = 900
Score = 938 bits (485), Expect = 0.0
Identities = 497/501 (99%), Gaps = 1/501 (0%)
Strand = Plus / Plus
Query: 1 aagacagtccagactgcaaagggagatcctgtctttaataaacaaaacatcaaaatctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagacagtccagactgcaaagggagatcctgtctttaataaacaaaacatcaaaatctaa 260
Query: 61 tacaatttgcacagcccacctcagccttacagcttcctatgatccttgactccttaaaca 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 tacaatttgcacagcccacctcagccttacagcttcctatggtccttgactccttaaaca 320
Query: 121 gagttaagtctgtgcacactcaaaatccaacactgatatagactgagatcgtaaatttta 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 gagttaagtctgtgcacactcaaaatccaacactgatatagactgagatcataaatttta 380
Query: 181 cttttgtcaacccattattataataattatatccttacatgtttcttcaaagacacagga 240
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 cttttgtcaa-ccattattataataattatatccttacgtgtttcttcaaagacacagga 439
Query: 241 caaaattaaagtactaggttcacaaaagtgatgtaggaacagactattacccacatgtac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caaaattaaagtactaggttcacaaaagtgatgtaggaacagactattacccacatgtac 499
Query: 301 taagcaagtacaattttcaaaagaaaagtcatttttggtgactcccactctataataata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taagcaagtacaattttcaaaagaaaagtcatttttggtgactcccactctataataata 559
Query: 361 tataaaatcaagtttaagtttattttcatgtaatggagaagtctgtaaaccaccatattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tataaaatcaagtttaagtttattttcatgtaatggagaagtctgtaaaccaccatattc 619
Query: 421 agtaaaggaactcgtgtaatcaaggctttgctctacaaatggcatgaggtacttgcagta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agtaaaggaactcgtgtaatcaaggctttgctctacaaatggcatgaggtacttgcagta 679
Query: 481 aatatatttttttaaaaagaa 501
|||||||||||||||||||||
Sbjct: 680 aatatatttttttaaaaagaa 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 900
Length adjustment: 10
Effective length of query: 491
Effective length of database: 890
Effective search space: 436990
Effective search space used: 436990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
