BAC Information

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BAC

Clone NameMSMg01-411G20
Chromosome2 (Build37)
Map Location 40,385,892 - 40,386,384
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042604, Magmas-ps
Downstream geneLOC666531, Lrp1b, LOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411G20.T7 (MSMg01no411_g20.b1)MSMg01-411G20.TJ (MSMg01no411_g20.g1)
ACCAG508440AG508441
length775783
length of high quality
(start - end)		495 (43 - 537)466 (77 - 542)
definitionCHROMAT_FILE: MSMg01no411_g20.b1 PHD_FILE: MSMg01no411_g20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:28 2005CHROMAT_FILE: MSMg01no411_g20.g1 PHD_FILE: MSMg01no411_g20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTACCCTTGCAATTCCACACCAGCACCTGTGGCTATTCCTGTAGTAA
CCAAGAGGGGCACGACCTCAACTGCCCTCTTATGTTGGGCAGTTATCATA
TCTATAAATGGGATTGGCAAGGAAAAGGAGTACCAACGTGCAAACTCCTG
ACCAGCTGGAAGGTAGGTGATAATATTCTTTAAAGTGTCCAGGACTGGTG
ACATTAAGGACTTGGTATGTTGAGGTCAAGGTCTGAAGCAAAAGGCGAAA
TTACAAGTTAGTGCCATTTATGAGGGGTGATGTCAAAGAGGTAAGGACCT
TGGAGGAATGTTTGATTATCTCTCATACTTTTCTGATATCTAGGGGGTGG
GCAATTGAGACAAATTTTCTCTGGATATGGATGATACTGGGGAACTTGGC
TGATTTTTACAGTAGAGCTTACCAACAACTCCTGTCTCCCACCTGGAATC
CAATGGGTCTTGTATGTAGAAAAAGAGTGTCTTGCAGTGTTGATAGAAAA
AAAATGATTGGTCCGTGTTCTTACCATATGTATCTGACAAGAACAATATG
GGCAGCCCCCATATTCCTCTGGACATTTTCTACAATAACCTTCTTGCCTG
CCAAAGACAAAGCGAGGATATAGACTTTATTATTACACGGGTGTACATCA
CCTAAATGAATCCCATTGCTTTATTCTCCCTCTCTGCCTCTGTATATCTC
CTCCATCTATTTTAAAATACCTCCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTGGAATAACAAAAAAACAAAA
ACAAAACAAAACAAAAAAAACAAAAAACAAAAAATGGGATAGAAAAATAC
TATTCTCAACAAAAACTTACCTCTGGGGAAATAACCATACCTGACCTAAA
GCTTTATTACAGAGTAATCATGATAATACTGTAAGGTATTAGTACAGAGA
CAGGCACATATATCAAAGGAATAGAACTGAAGACCCAGAAATGAACCCAG
ATAACTATGCTCACTTGATCTTTGACAAAAGAGCTAAAACCATCCAGTCA
ACATGTAGAGGAATTCACAGTGATCCATTCTTATCTCCTTGTATAAAGCA
CAAGTCCAAGTGGATCAAGAACATCCACATAAAACGAGGTATACTGAAAC
TAATAGAAGAGAAATTGGGGAAGATTCTTGAAACCATGGGCTCAGGGAAA
AATTTCTTGACTAATATTTTGATAGGGCCCTAACTTACCTGTGTATTTAG
ACCCTTTAATTATTCTGAAGAAATCAATCAACATGTATCTTCCAGGNTGT
TCAATAATATTAACAAAAACTTCATTTGTTAAAATGGNAATTTCCTTAGN
CTTTCTCAAATGGNACATGTCACTATGGGGGCATTGGTTTTTGACCTCCT
TTGTGGCCCACAACAAAAGGAAAATTTTTTTAGCTTTTTAATTAACCACG
GAATTGGATTGGTTTACCTTTCTTCCCCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_g20.b1 MSMg01no411_g20.b1 CHROMAT_FILE:
MSMg01no411_g20.b1 PHD_FILE: MSMg01no411_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:28 2005
         (495 letters)



>mm_chr2_40385689_40386584
          Length = 896

 Score =  799 bits (413), Expect = 0.0
 Identities = 473/493 (95%), Gaps = 3/493 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttacccttgcaattcca-caccagcacctgtggctattcctgtagtaaccaa 62
           |||||||||||| |||||||||||| ||| ||||| | |||||||||||||||| |||||
Sbjct: 204 ggaattctttactcttgcaattccagcactagcacttatggctattcctgtagtgaccaa 263

                                                                       
Query: 63  gaggggcacgacctcaactgccctcttatgttgggcagttatcatatctataaatgggat 122
           |||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 264 gaggggcatgacctgaactgccctcttatattgggcagttatcatatgtataaatgggat 323

                                                                       
Query: 123 tggcaaggaaaaggagtaccaacgtgcaaactcctgaccagctggaaggtaggtgataat 182
           ||||| ||||||||||||||||||||||||||||||||||||||| |||||  |||||||
Sbjct: 324 tggcagggaaaaggagtaccaacgtgcaaactcctgaccagctggcaggtacatgataat 383

                                                                       
Query: 183 attctttaaagtgtccaggactggtgacattaaggacttggtatgttgaggtcaaggtct 242
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 attctttaaagtgtccaggactggtaacattaaggacttggtatgttgaggtcaaggtct 443

                                                                       
Query: 243 gaagcaaaaggcgaaattacaagttagtgccatttatgaggggtgatgtcaaagaggtaa 302
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaagcaaaaggtgaaattacaagttagtgccatttatgaggggtgatgtcaaagaggtaa 503

                                                                       
Query: 303 ggaccttggaggaatgtttgattatctctcatacttttctgatatctagggggtgggcaa 362
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 504 ggaccttggaggaatgtttgattatctctcatacttttctgatatctaggggttgggcaa 563

                                                                       
Query: 363 ttgagacaaattttctctggatatggatgatactggggaacttggctgattttt-acagt 421
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 564 ttgagacaaattttctctggatatggatgatactggggaacttggctgattttttacagt 623

                                                                       
Query: 422 agagcttaccaacaactcctgtctcccacctggaatccaatgggtcttgtatgtagaaaa 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agagcttaccaacaactcctgtctcccacctggaatccaatgggtcttgtatgtagaaaa 683

                        
Query: 482 aga-gtgtcttgc 493
           | | |||||||||
Sbjct: 684 aaaagtgtcttgc 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 896
Length adjustment: 10
Effective length of query: 485
Effective length of database: 886
Effective search space:   429710
Effective search space used:   429710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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