NNNGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGGAGCACCTTGAAGAGAAATGATCTAATCAAGAGGCAGA
TAGAAAGTAGAATGCACAGAGTAACGCATGCCATTTGACGTGTGTATCAC
CAGGATACTGTCTCATGAATATTATTGGTTGAATGGTTAATTTGCATTTA
AATGAAGAGTAGTATCTTAGCAAGGCTCTAATAGTAGAATTTAATACATT
AAAGAAAGGATGGACTTCCCAGAGTCCTTATGAATTAGTGACTTTTAACA
TGCCAAAGGTTTCTAGAATTTTATTTAATTAAGGGTAATAGGAAAATAAG
ACAAATTCTCTTATATGCAGAATCAATTTCTCCCTCCCCCCAGCTCTCTC
TATACACACACACACATACACACACACACACACACACACACACACAGACA
CACACACACAGAGACATGTGTGTGTGTGTGCATGTGTGTGATCATATGAA
AGTATAAAGAAGACTGTATTTTGAAGGAAGATGGAGACCATCAGGAAGAG
GGACAAGGGAAGGTGATGGGAATGGATATAAAGATAATGTATGAAAATAA
TGTAAGCCTTATCTTATACCTCCAGTACAGAAACAACATAATTATCCACC
TTCCACTTCCTTAAATAAGCCCAAAAGGTCTGGTGTTGACCTTTTCAAAT
AGCTTGGGGACTTCGTTTTAGTCATTCTCACTTACATTCTGGCTCCTCGC
GCCT

TTTCTTCCTTTTCCTCCCTCTCCTCCTCTTCTTTTCTTTTTTCCTTCTTC
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGGTTTTTTCTCTTGCTTTTACTTTGTT
GAGCATTTCAAATGCACTATTTCATTGTCTTTGTTCTTGGATAATTTCTC
AGCAATAGTTAAGGAATTGTTTCTTCCTATAATGGTCAGCTATTTTTTTC
TTGCTACTTACAGAATGTCTTCATGTTTTCAGCTATTGACAGTTATATTA
TAAGATGTCCAGGTGCAATTGCTTTTGAAGCTTGACCCTTATTGACATTC
TTGAACATGTACATTTTTGTTTCTGATGAAACCTGTGACGTTTCCAACCA
CTAATTTTATAACGGTTCTGCTTTCTTTCTCTTCTCTCCCAGTGCACATA
TTTAAGTTCCGCATAGTGTTATTTTGTTCCTATCTACCGATTCTTTTTTT
TCACTGCGCTAATTTATATACACCTATTCCCCACCTGACTCTCTTCTCTT
TTACTGTATGCCCGAACCTTTTTTCCCCTATATTCCTTCCCCCTTCGTCC
CCCCCCATCTTCTTCACCACTCCCCTTTTACATTCTTATTCTGATCTCCT
CCTTTTTTCTTTTGTCTCCACTATCCCTTCTACTTATTTTATCCCACCTA
TACATCTCCCGTCTCTTTATATGTTTTCCCTTTTTTTCTCTTTTTATCAC
CTTTTGTCTCCTCTCTTCTTTCCCCCCGTTATTCTATACCCACCCCTTAT
TATTTTCATTAATCCCTTTACTACATCTTTTTCTATCATCATCTCCATCT
TCT

Query= MSMg01no411_l06.b1 MSMg01no411_l06.b1 CHROMAT_FILE:
MSMg01no411_l06.b1 PHD_FILE: MSMg01no411_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:50 2005
         (487 letters)



>mm_chr2_139437356_139438239
          Length = 884

 Score =  851 bits (440), Expect = 0.0
 Identities = 472/486 (97%), Gaps = 9/486 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctggagcaccttgaagagaaatgatctaatcaagaggcagatagaaagtagaat 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ggaattctggagcactttgaagagaaatgatctaatcaagaggcagatagaaagtagaat 489

                                                                       
Query: 64  gcacagagtaacgcatgccatttgacgtgtgtatcaccaggatactgtctcatgaatatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gcacagagtaacgcatgccatttgacgtgtgtatcaccaggatactgtctcatgaatatt 429

                                                                       
Query: 124 attggttgaatggttaatttgcatttaaatgaagagtagtatcttagcaaggctctaata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 attggttgaatggttaatttgcatttaaatgaagagtagtatcttagcaaggctctaata 369

                                                                       
Query: 184 gtagaatttaatacattaaagaaaggatggacttcccagagtccttatgaattagtgact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtagaatttaatacattaaagaaaggatggacttcccagagtccttatgaattagtgact 309

                                                                       
Query: 244 tttaacatgccaaaggtttctagaattttatttaa--ttaagggtaataggaaaataaga 301
           ||||||||||||||||||||| ||||||||   ||  |||||||||||||||||||||||
Sbjct: 308 tttaacatgccaaaggtttctggaatttta---aaaattaagggtaataggaaaataaga 252

                                                                       
Query: 302 caaattctcttatatgcagaatcaatttctccctccccccagctctctctatacacacac 361
           |||||||||||||||||||||||||||||| ||  ||||||||||||||| |||||||||
Sbjct: 251 caaattctcttatatgcagaatcaatttctgcc--cccccagctctctctctacacacac 194

                                                                       
Query: 362 acacatacacacacacacacacacacacacacacagacacacacacacagagacatgtgt 421
           |||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 193 acaca--cacacacacacacacacacacacacacagacacacacacagagagacatgtgt 136

                                                                       
Query: 422 gtgtgtgtgcatgtgtgtgatcatatgaaagtataaagaagactgtattttgaaggaaga 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gtgtgtgtgcatgtgtgtgatcatatgaaagtataaagaagactgtattttgaaggaaga 76

                 
Query: 482 tggaga 487
           ||||||
Sbjct: 75  tggaga 70


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 884
Length adjustment: 10
Effective length of query: 477
Effective length of database: 874
Effective search space:   416898
Effective search space used:   416898
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)