BAC Information

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BAC

Clone NameMSMg01-412E12
Chromosome2 (Build37)
Map Location 45,899,349 - 45,899,597
singlet/doubletsinglet
Overlap genenone
Upstream geneZeb2, LOC100042661, LOC100041337, LOC666604
Downstream geneLOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412E12.T7 (MSMg01no412_e12.b1)MSMg01-412E12.TJ (MSMg01no412_e12.g1)
ACCAG509091AG509092
length746754
length of high quality
(start - end)
247 (78 - 324)428 (77 - 504)
definitionCHROMAT_FILE: MSMg01no412_e12.b1 PHD_FILE: MSMg01no412_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:35 2005CHROMAT_FILE: MSMg01no412_e12.g1 PHD_FILE: MSMg01no412_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCAGAGCATCC
GCGGAATTCCCAATTATTTACAAAAAAGTATGAGTTCAGTTATTTGTAGA
GAATAAGTAAAAGCACTAATTTGTAGAGAANAAGGACAGAATTGAAGAAA
TTATGGTAAAAAAAAAATGCAGACACAGATGCTCACAGCCCTTGTTCTGT
TTCTTTTGTGAAAACTAAAAGAACAACAAACAAGCAAACAAACAACAAAA
ACCCAAAATAAATACATTATTGTTAATCCTGGACGTTGGGAAATGACACA
AAGAAGGGATGAATGGCTTTGGATTTTATTTGTGTCTTTTTGTGTGCTTT
GAAATAACATATTATCTAGTTAATAGATTGAAAGAATACATGAGAATCTG
AAATACATTAAAATACATTTTTGTAATGTATTTGTAATACAGTAAATAAA
GAGTTGGGTCAGGTAGACAGTTTTCTCACTTTTGGAATAATTATTTTGCT
ATTCAACAGTGAAATATAGATTATAAATTTCATTTTAGTGAATATTGTAC
TCTCAAGGTGTACTTTTCAACAGTTCTTGAAGCAATATTTCTGTGCTTAT
AGTCGCTGCATTAGCTACTTCCTGACAACAGAAATAAATGGTAAACGGAA
CATTTGTTTCGTTGTATTGATTTTCTTAACCCTTGACTCTTATCACACTT
TGTCCATTACAATTCGCACTCCTGTTGTATCACCACTGCCCCTTTA
NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTTCCCCATTC
TTAATAGGGTTATTCGATTCTCTGGAGTCTAACTTCTCGAATTCTTTGTA
TATATTGGATATTAGCCCTCTATTGGATGTAGGATTGGTAAAGATCTTTT
CCTGATCTGTTGGTTACCCTTTAGTCCTATTGACAGTATTCTTTGCCTTA
CAGAAGCTTTGCAATTTTATGAGTTCCCATTTGTCAATTATTGATCATAG
AGCATAAGCCATTGGTGTGTTCTTTAAATTTTCCCCTGTGCCCATGTGTT
TGAGGCTCTTCCACATTTTCTCTTCTATTAGTTTCAGTGTATCTGGTTTT
ATATAGAGATCCTTGAGACACTTGGACTTGAACTTTGTAGAAGGAGAAAA
AGAATGGGTTGGTTTGCATTCTTCTACATGCTGACCTCCAATTGAACTGG
TACCATTTGTTGAGATTCATTTTTTTTCCATTGGATGGGTTTACCTCCCT
TTGTCAAGATTCACTGCATTATAGTTGGGTGGATTACTTTTGGTCTTTAA
CTCCCTTCCCTTCCCTTTCTGGCTGATTCGTTTTCATTACCCCCATTTTT
TTTTTTTTCTTCCCTTTCCTCTCCCCCTATTCTGCGTATGTTTCCTCCCC
CCGCAATCCCCTTCATCTTTTGCCTCTGCTCTTTCTTTTATTTTCCCTTT
CTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_e12.b1 MSMg01no412_e12.b1 CHROMAT_FILE:
MSMg01no412_e12.b1 PHD_FILE: MSMg01no412_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:35 2005
         (247 letters)



>mm_chr2_45899149_45899797
          Length = 649

 Score =  398 bits (206), Expect = e-115
 Identities = 238/249 (95%), Gaps = 2/249 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatgagttcagttatttgtagag-aataagtaaaagcactaatttgtagagaanaagga 59
           |||||||||||||||||||||||| || || ||||||||||||||||||||||| |||||
Sbjct: 201 gtatgagttcagttatttgtagagaaaaaaataaaagcactaatttgtagagaaaaagga 260

                                                                       
Query: 60  cagaattgaagaaattatggtaaa-aaaaaaatgcagacacagatgctcacagcccttgt 118
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 261 cagaattgaagaaattatggtaaacaaaataatgcagacacagatgctcacagcccttgt 320

                                                                       
Query: 119 tctgtttcttttgtgaaaactaaaagaacaacaaacaagcaaacaaacaacaaaaaccca 178
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtttcttttgtgaaaagtaaaagaacaacaaacaagcaaacaaacaacaaaaaccca 380

                                                                       
Query: 179 aaataaatacattattgttaatcctggacgttgggaaatgacacaaagaagggatgaatg 238
           |||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 aaataaatacagaattgttaatcctggaggttgggaaatgacacaaagaagggatgaatg 440

                    
Query: 239 gctttggat 247
            ||||||||
Sbjct: 441 actttggat 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 649
Length adjustment: 9
Effective length of query: 238
Effective length of database: 640
Effective search space:   152320
Effective search space used:   152320
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)