NNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACCTGTTGCATACCGAATGGCAGAGAAACACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGA
GATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGAC
AGCAGATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTG
GTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCC
TCAGAAAATTGGACATAGTACTACCGGAGGATCCCACAATACCTCTCCTG
GGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAGAATCCA
GATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACA
ATGGAATACTAATCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGG
CAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAGGTAACCCAATCAC
AAAGGAACTCGCACAATATGTACTCACTGATAAGTGGATATTAGCCCAGA
AACTTATGATACCCAGATATTAGAAACACTTGCCAACGGCTGAAATTCAG
AAGAAAAAAAACCAAGGGGGAACCTTTACCTTTCCTTAAATGGGAGAAAA
ACCCCCCTGGAAGGG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGAAGGAATTAAAGCAGCGCT
TTGAGAAAATGCTACTTAATGGCTTGCTCCTCGTGGCTTGCTAAGCCTGC
TTTCTTTCTCTTTCTTCTTTTTTTTGCAGGGGTGGGGGGCAGGAATTTAA
TCAAACAAGCCAAATCCCATGTCATCATCTGACTCCTTCTTGTCCACAAC
AGGCAGCAAAAGCCAGCCTGCTTCCCTATACAACCCAGGACCACCTAGCT
GCCCAGGAATGGCAGTGCCCTCAGTGAGCTGGGCCCTCCCACATCAATAA
TCAATCAAGAAAATGGCCTACAGACTTGGCTTACAGCCCCTTTCTCAACT
GAGGTTCCCTCTTCTCAGATGACCCAGACTTGAGTCAGGTTGACAAAAAC
CAAACCAAACCAAAACCAAAACTAGCTAGCACAGTTAAGAAAGACACTGG
CTCTGTTCTCAGACCTGGGATAAGTCCCCTTCCATGAGTATCAGTTAGGA
AAGGGATGATGCAGCTACCTCANGAGAGTTCCTGACAAGGTTGTGATGTA
AATTACATGAGGGAGGATTTACAAATGGGCAAGTGCCCCTGAGTCCAGAC
TTTTAAAAAGGATGCGTAGGGGTGAACCTAAACCAATTTGGGGGGAGTTT
GGGAACTTTGTCTGAACCTTGCCTCCTATTCCCACAATGGCATAAAAAAA
AAGGGGGTGGCATTT

Query= MSMg01no412_f09.g1 MSMg01no412_f09.g1 CHROMAT_FILE:
MSMg01no412_f09.g1 PHD_FILE: MSMg01no412_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:40 2005
         (430 letters)



>mm_chr2_38274961_38275788
          Length = 828

 Score =  721 bits (373), Expect = 0.0
 Identities = 411/429 (95%), Gaps = 12/429 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggaaggaattaaagcagcgctttgagaaaatgctacttaatggcttgctcctcgtggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aaggaaggaattaaagcagcgctttgagaaaatgctacttaatggcttgctcctcgtggc 404

                                                                       
Query: 61  ttgctaagcctgctttctttctctttcttcttttttttgcaggggtggggggcaggaatt 120
           ||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||
Sbjct: 403 ttgctaagcctgctttctttctcttccttcttttttttgca-gggt-gggggcaggaatt 346

                                                                       
Query: 121 taatcaaacaagccaaatcccatgtcatcatctgactccttcttgtccacaacaggcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 taatcaaacaagccaaatcccatgtcatcatctgactccttcttgtccacaacaggcagc 286

                                                                       
Query: 181 aaaagccagcctgcttccctatacaacccaggaccacctagctgcccaggaatggcagtg 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaaagccagcctgctttcctatacaacccaggaccacctagctgcccaggaatggcagtg 226

                                                                       
Query: 241 ccctcagtgagctgggccctcccacatcaataatcaatcaagaaaatggcctacagactt 300
           ||| ||||||||| |||||||||| ||||||||||||||||||||||||||     ||||
Sbjct: 225 cccacagtgagctaggccctcccatatcaataatcaatcaagaaaatggcc-----actt 171

                                                                       
Query: 301 ggcttacagcccctttctcaactgaggttccctcttctcagatgacccagacttgagtca 360
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 -----acagcccctttctcaactgaggttccctcttctcagatgacccagacttgagtca 116

                                                                       
Query: 361 ggttgacaaaaaccaaaccaaaccaaaaccaaaactagctagcacagttaagaaagacac 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ggttgacaaaaaccaaactaaaccaaaaccaaaactagctagcacagttaagaaagacac 56

                    
Query: 421 tggctctgt 429
           |||||||||
Sbjct: 55  tggctctgt 47


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 828
Length adjustment: 9
Effective length of query: 421
Effective length of database: 819
Effective search space:   344799
Effective search space used:   344799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)