BAC Information

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BAC

Clone NameMSMg01-413F02
Chromosome2 (Build37)
Map Location 119,080,574 - 119,254,598
singlet/doubletdoublet
Overlap geneRhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1
Upstream geneFsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1
Downstream geneLOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413F02.T7 (MSMg01no413_f02.b1)MSMg01-413F02.TJ (MSMg01no413_f02.g1)
ACCAG509880AG509881
length714775
length of high quality
(start - end)		636 (41 - 676)252 (72 - 323)
definitionCHROMAT_FILE: MSMg01no413_f02.b1 PHD_FILE: MSMg01no413_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:58 2005CHROMAT_FILE: MSMg01no413_f02.g1 PHD_FILE: MSMg01no413_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,080,574 - 119,081,205)(119,254,347 - 119,254,598)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TAGGAATGGATAGTGGTGATTGCATAATGGTATGATTGCACTTTGTGCCC
CAAACTAGTCCCATAAGGAAAATTAAAGCCAGGCACAGAGGTGTGCGCCT
AAGTCCCAGCACTCAGGAGATAAAGGCATTAAGATTGTGAAACTGAGAGC
AGCCTGGGCTACACATAAAGACCCTCTCTCGAAAAACAAAGTTTTATGTC
CTTTGAATTTTACCACAATAAAAACAATTAGAGCTTCTGGTGTCCATCCG
TGCCGGGAGCTGATCCTGTGCCACAGCAATCCACACCCAAATACTGCCGG
GAGAGAGCTTGTTTCCCAGGAGTGCTGACAAGCCTGTGAGCACAGAATCC
CCTGGTGATGTTCCCGAACATCCATTGTTTATCACAGTGGGTGACTGACT
GGATTCTATAAAGACGGGCAATGCAAGAGTAACTTCCTAGCAGTGGGTTT
TACAACGTTTGATCTGATTTCAAGAATGAGCATAGATGACATTAGGGGAG
TTCAGAGTCACACTTATCAGACATCAGAGACAAATAGCATCATACAAACT
CTGCATTTACATATGATGCACATACAGGAGAAAGGGTTTCATGTATGTAA
GTACTATAAACAACGGCATCTTGTGCCTCAGTATTTCTACGAAGAAAGAT
GTTCCCTCCTCGGC

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCAGTTGGAGTTCTCTATCCCCAGGGAA
TGCTACTTTGTGTCAGGTTGATAAGAATTACATAGCACACTCTGGAAGTC
CCTTTTAGCTTTGAGTCGATTTTTATACAGTCTCCCAAATAGGCTCTGAA
AGTGTGTTCTAATGTAAACAGTCGGTATAAGATGCTTGCCTTGGAACAAG
TTCATTTTTTAGAGAATCCTTGATCTCAGTGGCATTTTCAGGGTGTAGGA
GAGGGGAAGGTGTTTATTTTGATTGCCTTAAGNCAGTATTATGGTAAATT
ACTTGTGGACTTCTTGCTTCTGATCATTTCTCTCGCTTACACATGATCCT
GACACCATTTTATGCCGATAAGATTCTTATCTTATGTTCAACATGATTTG
TTTTTTTTCGCTATATTCACATATCCTATTTGATTTTGAACTCTTTTTAT
ACTTCCCGTCATTGTCCCTTCATTGTCCTTTCCTTCGAGCCTCTTTTCAT
TCTGCCTCCCTATCTTTTATTATTTATTCTCCCCTTTTTCTTTGTATCCC
CTCTCCTCTTTACCTTTTTCAAACTTTCTTCTTATCTTTTTCACTTCGCT
CTTCATCCCACTCCCACTATTTCTCCCGTTAATGTCTCCCACCCCCTCTT
CCTATGTGAGCCTCTCTTATACCTTATTATTTACCCGTTCACCCGTTCGT
TTTATATTACTCCTCTCACTCGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_f02.b1 MSMg01no413_f02.b1 CHROMAT_FILE:
MSMg01no413_f02.b1 PHD_FILE: MSMg01no413_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:58 2005
         (636 letters)



>mm_chr2_119080370_119081405
          Length = 1036

 Score = 1222 bits (632), Expect = 0.0
 Identities = 632/632 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaggaatggatagtggtgattgcataatggtatgattgcactttgtgccccaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaggaatggatagtggtgattgcataatggtatgattgcactttgtgccccaaa 264

                                                                       
Query: 65  ctagtcccataaggaaaattaaagccaggcacagaggtgtgcgcctaagtcccagcactc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctagtcccataaggaaaattaaagccaggcacagaggtgtgcgcctaagtcccagcactc 324

                                                                       
Query: 125 aggagataaaggcattaagattgtgaaactgagagcagcctgggctacacataaagaccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggagataaaggcattaagattgtgaaactgagagcagcctgggctacacataaagaccc 384

                                                                       
Query: 185 tctctcgaaaaacaaagttttatgtcctttgaattttaccacaataaaaacaattagagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctctcgaaaaacaaagttttatgtcctttgaattttaccacaataaaaacaattagagc 444

                                                                       
Query: 245 ttctggtgtccatccgtgccgggagctgatcctgtgccacagcaatccacacccaaatac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttctggtgtccatccgtgccgggagctgatcctgtgccacagcaatccacacccaaatac 504

                                                                       
Query: 305 tgccgggagagagcttgtttcccaggagtgctgacaagcctgtgagcacagaatcccctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgccgggagagagcttgtttcccaggagtgctgacaagcctgtgagcacagaatcccctg 564

                                                                       
Query: 365 gtgatgttcccgaacatccattgtttatcacagtgggtgactgactggattctataaaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtgatgttcccgaacatccattgtttatcacagtgggtgactgactggattctataaaga 624

                                                                       
Query: 425 cgggcaatgcaagagtaacttcctagcagtgggttttacaacgtttgatctgatttcaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cgggcaatgcaagagtaacttcctagcagtgggttttacaacgtttgatctgatttcaag 684

                                                                       
Query: 485 aatgagcatagatgacattaggggagttcagagtcacacttatcagacatcagagacaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aatgagcatagatgacattaggggagttcagagtcacacttatcagacatcagagacaaa 744

                                                                       
Query: 545 tagcatcatacaaactctgcatttacatatgatgcacatacaggagaaagggtttcatgt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tagcatcatacaaactctgcatttacatatgatgcacatacaggagaaagggtttcatgt 804

                                           
Query: 605 atgtaagtactataaacaacggcatcttgtgc 636
           ||||||||||||||||||||||||||||||||
Sbjct: 805 atgtaagtactataaacaacggcatcttgtgc 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no413_f02.g1 MSMg01no413_f02.g1 CHROMAT_FILE:
MSMg01no413_f02.g1 PHD_FILE: MSMg01no413_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:58 2005
         (252 letters)



>mm_chr2_119254147_119254798
          Length = 652

 Score =  487 bits (252), Expect = e-142
 Identities = 252/252 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagttggagttctctatccccagggaatgctactttgtgtcaggttgataagaattac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ctcagttggagttctctatccccagggaatgctactttgtgtcaggttgataagaattac 393

                                                                       
Query: 61  atagcacactctggaagtcccttttagctttgagtcgatttttatacagtctcccaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atagcacactctggaagtcccttttagctttgagtcgatttttatacagtctcccaaata 333

                                                                       
Query: 121 ggctctgaaagtgtgttctaatgtaaacagtcggtataagatgcttgccttggaacaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ggctctgaaagtgtgttctaatgtaaacagtcggtataagatgcttgccttggaacaagt 273

                                                                       
Query: 181 tcattttttagagaatccttgatctcagtggcattttcagggtgtaggagaggggaaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tcattttttagagaatccttgatctcagtggcattttcagggtgtaggagaggggaaggt 213

                       
Query: 241 gtttattttgat 252
           ||||||||||||
Sbjct: 212 gtttattttgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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