Query= MSMg01no413_l01.b1 MSMg01no413_l01.b1 CHROMAT_FILE:
MSMg01no413_l01.b1 PHD_FILE: MSMg01no413_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:26 2005
(512 letters)
>mm_chr2_151957690_151958601
Length = 912
Score = 946 bits (489), Expect = 0.0
Identities = 504/509 (99%)
Strand = Plus / Plus
Query: 4 ggaattcctcagtccagcatggagttccggtggattttatgggccagccacaagcagaca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctcagtccagcatggagttccggtggattttatgggccagccacaagcagaca 263
Query: 64 aatggagaagaaaaacatccccccggagcccactcgcctctcagaacctaacttccgctc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatggagaagaaaaacatccccccggagcccactcgcctctcagaacctaacttccgctc 323
Query: 124 agccggaaggatgctgggctgttttaaccctgtgtgggaggtgacctcgggagatggatt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agccggaaggatgctgggctgttttaaccctgtgtgggaggtgacctcgggagatggatt 383
Query: 184 caagaccctccaggctctcgccctgaattgacactagtctttcccaaagctcagctttcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caagaccctccaggctctcgccctgaattgacactagtctttcccaaagctcagctttcc 443
Query: 244 ccgcaagcttttggcaaagctgtctcaaaggtctcaagccccaggctggtgagtgagatg 303
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccccaagcttttggcaaagctgtctcaaaggtctcaagccccaggctggtgagtgagatg 503
Query: 304 gctcagaggatgaggaagcctgacagccagagttcaatccttggaacccacatggggaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gctcagaggatgaggaagcctgacagccagagttcaatccttggaacccacatggggaaa 563
Query: 364 ggagggaaatgatgattgcaagtttcttctgacctccacacaagcatggtggcaacctca 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggagggaaatgatgattgcaagtttcttctgacctccacacaagcatggtggcaacctcg 623
Query: 424 caaacaaacaagcatttaaaggccccagatgcctattagtgagcaccgtacatctacttc 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caaacaaacaagcatttaaaggccccagatgcctattagtgagcaccgtacatctactta 683
Query: 484 ctgggaagtgcagtatgtcagactggcag 512
|||| |||||||||||||| |||||||||
Sbjct: 684 ctggaaagtgcagtatgtccgactggcag 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_l01.g1 MSMg01no413_l01.g1 CHROMAT_FILE:
MSMg01no413_l01.g1 PHD_FILE: MSMg01no413_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:27 2005
(509 letters)
>mm_chr2_152198192_152199100
Length = 909
Score = 911 bits (471), Expect = 0.0
Identities = 499/509 (98%), Gaps = 2/509 (0%)
Strand = Plus / Minus
Query: 1 tgtcatctgggagcaaccagatcttggggtacaaaatttagcatttgaatacatagcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tgtcatctgggagcaaccagatcttggggtacaaaatttagcatttgaatacatagcagc 568
Query: 61 accatagcaatctccaacatgtgtatgcatttgtatgtacatgcaacagatgtgtatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 accatagcaatctccaacatgtgtatgcatttgtatgtacatgcaacagatgtgtatata 508
Query: 121 caggtatatacaacagagagagagagagagagagttagttctgcctaaagtactctgacc 180
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 caggtatatacaac--agagagagagagagagagttagttctgcctaaagtactctgacc 450
Query: 181 aggaagtcttctcggataatcccaggtcagagggcaactctacagagtcacgtcactctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aggaagtcttctcggataatcccaggtcagagggcaactctacagagtcacgtcactctc 390
Query: 241 tctacttcctgtgagttctaggtcatcaatgaagcaacccagggtctgaatcccagcccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 389 tctacttcctgtgagttctaggtcatcaatgaagcaacccagggtctgaatcccagcatg 330
Query: 301 gcataaacttgagtgtagtggtgacactttgatcctagccctaggaagttagacgcaggg 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gcataaacttgagtgtattggtgacactttgatcctagccctaggaagttagacgcaggg 270
Query: 361 ggaccagagttttaaggtcatatttggctatatagcaaatttgaggcagcctgagctaca 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggaccagagttttaaggtcgtatttggctatatagcaaatttgaggcagcctgagctaca 210
Query: 421 tctgtttagaaacaaagatcaacctaaaaatgccagaaattaactgacttccaggatgca 480
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 209 tctgtttagaaagaaagatcaacctaaaaatgccagaaattaactgacttccgggaggca 150
Query: 481 taataaaactgtgggctacactttggaaa 509
|||||||||||||| ||||||||||||||
Sbjct: 149 taataaaactgtggtctacactttggaaa 121
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
