BAC Information

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BAC

Clone NameMSMg01-414L07
Chromosome2 (Build37)
Map Location 118,730,381 - 118,910,798
singlet/doubletdoublet
Overlap geneBahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5
Upstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd
Downstream geneRad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414L07.T7 (MSMg01no414_l07.b1)MSMg01-414L07.TJ (MSMg01no414_l07.g1)
ACCAG510938AG510939
length781806
length of high quality
(start - end)		462 (45 - 506)438 (77 - 514)
definitionCHROMAT_FILE: MSMg01no414_l07.b1 PHD_FILE: MSMg01no414_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:50 2005CHROMAT_FILE: MSMg01no414_l07.g1 PHD_FILE: MSMg01no414_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,910,366 - 118,910,798)(118,730,381 - 118,730,818)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTTCACAGTACCTACACTGGGTGGCTCACAATTGCTATTAACTCC
AGCTCTAGAAACTCCAACATCTGGCTTCTTTGGGCATCTGTTCTCTCTCT
CTCTCTCTGCATCTGTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTT
TCTCTCTCACACACACACACACACACATACACTTTAAAATAATAAAAATA
AAATTTTAAAGTAAAAAAAATTAGGAACCTTCTAAAAAGGATTCCTACAC
TCTGTTTGCTTACTGTAAGTGAAAGCAGTGCTTTCAGGTTTAAGATGTCA
TTGTATAATTGATGTGAAGTTGTAGTTAGTTTATAAGTAAAAGTTCTCAA
TTTAGCTCAAAGTTTATCTAATTTATACAAGATAGCATTTATAAAACACA
GACAAGTTAACCTGGCACAGTGGCACACACCATGCATATTAAGGCTGCTG
TGATTTCTTAGTATGAGCTATAAAACATGAGTTCTGGCCTGGCCTGCCAA
TGAGACATTGTTCAAAAAAGAAAAAAAAAGAAAGCTGTTATACTTTCAAT
AGTTACTAATAAAAAGGGGGAAGTAAATCTCTATCTAAAACAAAGAAAAA
ACTTGTTGAAACTGAAAAATAAGTTTAAACCCTTATGCAAAAATATGCAA
TGGCTCCACCGAATGAAAAAATACCTCACCCCATAATTATAAAAATATAA
TGCCCGGGCCTTGTGTGGTGAAACCCTCTAA

CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTGTGGATGGAGGGGAACCTTTGG
CTTTTCTAGAAATGCTCAGTATGGATGCAGTCCTTGGAGGTCTCTGACCT
TTTCTGTGAAAGGTGTATAAATAGGGCACGTCTGTAAGGCTCTGGCCTTG
GGCATGTTTAACTGCTGTTTCTGATCCATCTGCTGCTGAAGATTGTTCAC
ATGACAGACACCACACAGACAGGAGTTGGAAAGGGGCTGTGGTCCTGTCC
TCCCATTGTCCTCATGGGGCCAGTCTCTTTCTGTACCCAGCTCTGCTGTG
TGTTGGCAGTTTACTTGTTGTCTATGCTACCGTATGCTTTACCTCTTTCC
GCCTGGGTGTCAGTGAGGGAGAAAACGCTATTCGGAGAACCCCTGACAAA
TAACCCTGGATCAGCCCTGTGGATGGGATTTGTATGGTTCCTTTTATATT
AAGTGTTTTTACTGACTTTCCAAGGTAGAGCTTTGGGGAAAAAATGCTAT
CATTTCCAGTGCCTTATAAGTTGGTGTATCGACTATCAATCCTACTCCTT
GGGCGAAGTGGTTAGAACACTGATAAATCGGTTTTTCCTTTACCTTTGCG
ATAATTCATATGTACACTTGATTCCATATTTTCTTTTTCCTCATTATTTC
TCCATTTTTTCCTCCCATTTCGTACGATTATCTAGCATCCTCTTTCTATT
CTTCCTCTCCGTTTTATATCTTCTCCCTCATACATCTTTATATTTATCTC
TTTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_l07.b1 MSMg01no414_l07.b1 CHROMAT_FILE:
MSMg01no414_l07.b1 PHD_FILE: MSMg01no414_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:50 2005
         (462 letters)



>mm_chr2_118909937_118910798
          Length = 862

 Score =  837 bits (433), Expect = 0.0
 Identities = 433/433 (100%)
 Strand = Plus / Minus

                                                                       
Query: 30  gggtggctcacaattgctattaactccagctctagaaactccaacatctggcttctttgg 89
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gggtggctcacaattgctattaactccagctctagaaactccaacatctggcttctttgg 803

                                                                       
Query: 90  gcatctgttctctctctctctctctgcatctgtgttctctctctctctctctctctctct 149
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gcatctgttctctctctctctctctgcatctgtgttctctctctctctctctctctctct 743

                                                                       
Query: 150 ctctctttctctctcacacacacacacacacacatacactttaaaataataaaaataaaa 209
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ctctctttctctctcacacacacacacacacacatacactttaaaataataaaaataaaa 683

                                                                       
Query: 210 ttttaaagtaaaaaaaattaggaaccttctaaaaaggattcctacactctgtttgcttac 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttttaaagtaaaaaaaattaggaaccttctaaaaaggattcctacactctgtttgcttac 623

                                                                       
Query: 270 tgtaagtgaaagcagtgctttcaggtttaagatgtcattgtataattgatgtgaagttgt 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgtaagtgaaagcagtgctttcaggtttaagatgtcattgtataattgatgtgaagttgt 563

                                                                       
Query: 330 agttagtttataagtaaaagttctcaatttagctcaaagtttatctaatttatacaagat 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agttagtttataagtaaaagttctcaatttagctcaaagtttatctaatttatacaagat 503

                                                                       
Query: 390 agcatttataaaacacagacaagttaacctggcacagtggcacacaccatgcatattaag 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agcatttataaaacacagacaagttaacctggcacagtggcacacaccatgcatattaag 443

                        
Query: 450 gctgctgtgattt 462
           |||||||||||||
Sbjct: 442 gctgctgtgattt 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no414_l07.g1 MSMg01no414_l07.g1 CHROMAT_FILE:
MSMg01no414_l07.g1 PHD_FILE: MSMg01no414_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:50 2005
         (438 letters)



>mm_chr2_118730181_118731018
          Length = 838

 Score =  839 bits (434), Expect = 0.0
 Identities = 437/438 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgtggatggaggggaacctttggcttttctagaaatgctcagtatggatgcagtccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtggatggaggggaacctttggcttttctagaaatgctcagtatggatgcagtccttg 260

                                                                       
Query: 61  gaggtctctgaccttttctgtgaaaggtgtataaatagggcacgtctgtaaggctctggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtctctgaccttttctgtgaaaggtgtataaatagggcacgtctgtaaggctctggc 320

                                                                       
Query: 121 cttgggcatgtttaactgctgtttctgatccatctgctgctgaagattgttcacatgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgggcatgtttaactgctgtttctgatccatctgctgctgaagattgttcacatgaca 380

                                                                       
Query: 181 gacaccacacagacaggagttggaaaggggctgtggtcctgtcctcccattgtcctcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacaccacacagacaggagttggaaaggggctgtggtcctgtcctcccattgtcctcatg 440

                                                                       
Query: 241 gggccagtctctttctgtacccagctctgctgtgtgttggcagtttacttgttgtctatg 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggccagtctcttgctgtacccagctctgctgtgtgttggcagtttacttgttgtctatg 500

                                                                       
Query: 301 ctaccgtatgctttacctctttccgcctgggtgtcagtgagggagaaaacgctattcgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaccgtatgctttacctctttccgcctgggtgtcagtgagggagaaaacgctattcgga 560

                                                                       
Query: 361 gaacccctgacaaataaccctggatcagccctgtggatgggatttgtatggttcctttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaacccctgacaaataaccctggatcagccctgtggatgggatttgtatggttcctttta 620

                             
Query: 421 tattaagtgtttttactg 438
           ||||||||||||||||||
Sbjct: 621 tattaagtgtttttactg 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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