Query= MSMg01no414_o03.b1 MSMg01no414_o03.b1 CHROMAT_FILE:
MSMg01no414_o03.b1 PHD_FILE: MSMg01no414_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:04 2005
(466 letters)
>mm_chr2_48216798_48217663
Length = 866
Score = 886 bits (458), Expect = 0.0
Identities = 464/466 (99%)
Strand = Plus / Minus
Query: 1 tgacaagtcactgatgtgtatttgtgtggagcagagaaagcctgagtgactgactgtgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tgacaagtcactgatgtgtatttgtgtggagcagagaaagcctgagtgactgactgtgtg 607
Query: 61 ctattgagagatcaatggccagtacaaggaccctggagtctcagtcccatggttatagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ctattgagagatcaatggccagtacaaggaccctggagtctcagtcccatggttatagca 547
Query: 121 aagctttccctccccctctaagtatgaatataaaagaatacacagaaaatgcccctggta 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aagctttccctccccgtctaagtatgaatataaaagaatacacagaaaatgcccctggta 487
Query: 181 gttttctcccatggatattatattctgaagatgacttgcctacagagaacacttttacta 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 486 gttttctcccatggatattatattctgaagatgacttgcctacagagaccacttttacta 427
Query: 241 ggattagctaaacctgtctccttgtttaactgtagttcataaatcctgcctccttgcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggattagctaaacctgtctccttgtttaactgtagttcataaatcctgcctccttgcttc 367
Query: 301 agctggataataactctcccttcctattcaagtgtataaaacaaacaccatgaatgtcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 agctggataataactctcccttcctattcaagtgtataaaacaaacaccatgaatgtcaa 307
Query: 361 ggagttatgtgacttctccatcagaccacagtccatcttatcccagtatgtctatctttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ggagttatgtgacttctccatcagaccacagtccatcttatcccagtatgtctatctttt 247
Query: 421 tttattattggaaattttatatatttatgtattaaccctttcctga 466
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttattattggaaattttatatatttatgtattaaccctttcctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_o03.g1 MSMg01no414_o03.g1 CHROMAT_FILE:
MSMg01no414_o03.g1 PHD_FILE: MSMg01no414_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:05 2005
(516 letters)
>mm_chr2_48110045_48110958
Length = 914
Score = 955 bits (494), Expect = 0.0
Identities = 510/516 (98%), Gaps = 2/516 (0%)
Strand = Plus / Plus
Query: 1 actggtgtttctcttctgttgggtactgttaactatttttcaaatttacatgtttgtaca 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggtgtttctcttctgttgggcactgttaactatttttcaaatttacatgtttgtaca 260
Query: 61 attttattataatattcctaggcctcaattttaattttgtttgcttgttgagtattgtta 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttattataatattcctaggcctcaattttaattttgtttgcttgttgagtattgtt- 319
Query: 121 agttattaatcttgactgaattagtttcagagaataatttgaaggtggggatcgttcatt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 320 -gttattaatcttgactgaattagtttcagagaataatttgaaggtggggatcattcatt 378
Query: 181 ttcattccataatcactaccattggtatttgtatgtcttgtcttttaagaaactttttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttcattccataatcactaccattggtatttgtatgtcttgtcttttaagaaactttttct 438
Query: 241 ctactgcccaatatctattcatttttcatcagcttattgaatttttagaatattcagttt 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctactgcccaatatcaattcatttttcatcagcttattgaatttttagaatattcagttt 498
Query: 301 ttataccatatttttattatttttttataaatctgctttttcctactaaatagagattca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttataccatatttttattatttttttataaatctgctttttcctactaaatagagattca 558
Query: 361 atgaaatagttgtcaaggaagttctcaaaaagatattaaggaaaactgtccttgtttacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atgaaatagttgtcaaggaagttctcaaaaagatattaaggaaaactgtccttgtttacc 618
Query: 421 tgtataggtcttgctcttgagaaacagagcatagtaccatgtataaataaaaaagttgca 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 619 tgtataggtcttgctcttgagaaacagagtatagtaccatgtataaataaaaaagttgca 678
Query: 481 aattcattttcatactgagacacaaataattccttc 516
||||||||||||||||||||||||||||||||||||
Sbjct: 679 aattcattttcatactgagacacaaataattccttc 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 914
Length adjustment: 10
Effective length of query: 506
Effective length of database: 904
Effective search space: 457424
Effective search space used: 457424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
