BAC Information

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BAC

Clone NameMSMg01-416E21
Chromosome2 (Build37)
Map Location 78,014,533 - 78,169,942
singlet/doubletdoublet
Overlap geneLOC667920, OTTMUSG00000016703
Upstream geneSestd1, LOC623706, LOC667906, Zfp533, BC003993
Downstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416E21.T7 (MSMg01no416_e21.b1)MSMg01-416E21.TJ (MSMg01no416_e21.g1)
ACCAG512154AG512155
length725756
length of high quality
(start - end)		650 (36 - 685)424 (60 - 483)
definitionCHROMAT_FILE: MSMg01no416_e21.b1 PHD_FILE: MSMg01no416_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:54 2005CHROMAT_FILE: MSMg01no416_e21.g1 PHD_FILE: MSMg01no416_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,169,297 - 78,169,942)(78,014,533 - 78,014,956)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTATA
TGTTACCATGTTCATGGTGTTTTGCCATAGCAAAAGTAACTAATACATCC
TAGTAGAATTTAGGAGGTAGATATACTATGAGCTTATTACTAGGATGGCC
TTTAAAGCACATAAACAATTAACCTATCTAAGAACTCAAAATGCTAAGTT
GTAATGTTGAACAGGAGATAAGATTAGTGGCCCAACACTCACCCAAATGC
TAGAACCTGTTTGCTTCCCAGGAGGGTGCAGCACTGGAAGACACCAGTGG
GAATCTTGCCCACCTACCCACACCAACTAGGTCAACCACAGGGCCCAGCT
GGCATGGGACTCACCTCCCCCACCCCTAGCTCTGAAGCTCCACCTTTCTT
CTGACCACTTCCTCATCCAGGCCAGAGCAGTGGCTCAATCCTACCCAAAC
AGTACAGACTCTGAGCTTCCCAGGAGGTCTATAGTAAACAAGGGTCCAGA
AAATCCATATTAACCAGGGGCACAGGAGGAATGCTCTAACCAGAGACACA
GAAGGGCTAGAGGGCTACCCTAACTAGAGAAAACACAGCCTGTCTCCAGG
GAGGCTCTAACTCAGGTCACAGAGACCTACCTGCCTCTAAGGAGGCTGGT
TCTAATCAGAGACAACCATAAGAATTCTCTTATTACAAGAGAACTAGATG
ACCAGAAACAAGCACCAGATCATAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAACCATATTTACTATTTAGTATTTGTCATTTATGGTATAT
TTTAAACAATTTCTAAATTCACTATCCATTTGGCATCAAAGGAGGACAGG
CCCTTGGAAGGCTTGATGCCCCAGTGTGGGGGAATGCTAGGGCAGTGAGA
TGGGAGTGGATGGGTAGGTGGGGGAGCACCCTCTTTGAAGCAGGGGGAGG
GAAGATGGGATAGAGGGTTTGCAGAGGGGAAACTGGGGAAGGGGATAACA
TTTGAAATGTTTTTAAATAAAATATCCAATAAAAAACAATGAACAAATTC
TGATTCTGAATCTTGTAAGTAACTATTTTTAGGGCACTGTTGAAGGACAG
AGAGTCAGACCCAATAGAATATATATCTATACCTATATCAGTCTATCTCT
ATATATTCGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTATCACATGTG
TATGCATGCCTGTGTATGCACAAACCGGATGGTCCTACATTGGCACATTG
CTGGTGGGGTCTGCTCATTCTCAAAATTTTGTNATCTCAAAATCATTGAT
GCTCCCCCAGTCCAAGGCTGTAAGCCCCTGAGGTTCCCCTAAAGACCCAT
TACGGTTTTTTCTCTGGTTACAAAACATTCGCACACCCTGACCGCGGTAG
AAACAATATTTGTCCTCTTCTCTACACTAATTACTTTTGCTGGCTTCCCC
CCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_e21.b1 MSMg01no416_e21.b1 CHROMAT_FILE:
MSMg01no416_e21.b1 PHD_FILE: MSMg01no416_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:54 2005
         (650 letters)



>mm_chr2_78169035_78170084
          Length = 1050

 Score = 1241 bits (642), Expect = 0.0
 Identities = 645/646 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctatatgttaccatgttcatggtgttttgccatagcaaaagtaactaatacatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 gaattcctatatgttaccatgttcatggtgttttgccatagcaaaagtaactaatacatc 849

                                                                       
Query: 65  ctagtagaatttaggaggtagatatactatgagcttattactaggatggcctttaaagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 ctagtagaatttaggaggtagatatactatgagcttattactaggatggcctttaaagca 789

                                                                       
Query: 125 cataaacaattaacctatctaagaactcaaaatgctaagttgtaatgttgaacaggagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 cataaacaattaacctatctaagaactcaaaatgctaagttgtaatgttgaacaggagat 729

                                                                       
Query: 185 aagattagtggcccaacactcacccaaatgctagaacctgtttgcttcccaggagggtgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aagattagtggcccaacactcacccaaatgctagaacctgtttgcttcccaggagggtgc 669

                                                                       
Query: 245 agcactggaagacaccagtgggaatcttgcccacctacccacaccaactaggtcaaccac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 agcactggaagacaccagtgggaatcttgcccacctacccacaccaactaggtcaaccac 609

                                                                       
Query: 305 agggcccagctggcatgggactcacctcccccacccctagctctgaagctccacctttct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 agggcccagctggcatgggactcacctcccccacccctagctctgaagctccacctttct 549

                                                                       
Query: 365 tctgaccacttcctcatccaggccagagcagtggctcaatcctacccaaacagtacagac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tctgaccacttcctcatccaggccagagcagtggctcaatcctacccaaacagtacagac 489

                                                                       
Query: 425 tctgagcttcccaggaggtctatagtaaacaagggtccagaaaatccatattaaccaggg 484
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tctgagcttcccgggaggtctatagtaaacaagggtccagaaaatccatattaaccaggg 429

                                                                       
Query: 485 gcacaggaggaatgctctaaccagagacacagaagggctagagggctaccctaactagag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gcacaggaggaatgctctaaccagagacacagaagggctagagggctaccctaactagag 369

                                                                       
Query: 545 aaaacacagcctgtctccagggaggctctaactcaggtcacagagacctacctgcctcta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaacacagcctgtctccagggaggctctaactcaggtcacagagacctacctgcctcta 309

                                                         
Query: 605 aggaggctggttctaatcagagacaaccataagaattctcttatta 650
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aggaggctggttctaatcagagacaaccataagaattctcttatta 263


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no416_e21.g1 MSMg01no416_e21.g1 CHROMAT_FILE:
MSMg01no416_e21.g1 PHD_FILE: MSMg01no416_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:54 2005
         (424 letters)



>mm_chr2_78014333_78015156
          Length = 824

 Score =  766 bits (396), Expect = 0.0
 Identities = 417/424 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaccatatttactatttagtatttgtcatttatggtatattttaaacaatttctaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaccatatttactatttagtatttgtcatttatggtatattttaaacaatttctaaatt 260

                                                                       
Query: 61  cactatccatttggcatcaaaggaggacaggcccttggaaggcttgatgccccagtgtgg 120
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 tactatccatttggcatcaaaggaggacaggcccttgtaaggcttgatgccccagtgtgg 320

                                                                       
Query: 121 gggaatgctagggcagtgagatgggagtggatgggtaggtgggggagcaccctctttgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaatgctagggcagtgagatgggagtggatgggtaggtgggggagcaccctctttgaa 380

                                                                       
Query: 181 gcagggggagggaagatgggatagagggtttgcagaggggaaactggggaaggggataac 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagggggaggggagatgggatagagggtttgcagaggggaaactggggaaggggataac 440

                                                                       
Query: 241 atttgaaatgtttttaaataaaatatccaataaaaaacaatgaacaaattctgattctga 300
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttgaaatgtaaataaataaaatatccaataaaaaacaatgaacaaattctgattctga 500

                                                                       
Query: 301 atcttgtaagtaactatttttagggcactgttgaaggacagagagtcagacccaatagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcttgtaagtaactatttttagggcactgttgaaggacagagagtcagacccaatagaa 560

                                                                       
Query: 361 tatatatctatacctatatcagtctatctctatatattcgtgtgtgtgtgtgtgtgtgtg 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatatatctatacctatatcaatctatctctatatattcgtgtgtgtgtgtgtgtgtgtg 620

               
Query: 421 tgtg 424
           ||||
Sbjct: 621 tgtg 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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