Query= MSMg01no416_h02.b1 MSMg01no416_h02.b1 CHROMAT_FILE:
MSMg01no416_h02.b1 PHD_FILE: MSMg01no416_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:04 2005
(573 letters)
>mm_chr2_136042055_136043027
Length = 973
Score = 793 bits (410), Expect = 0.0
Identities = 442/454 (97%), Gaps = 5/454 (1%)
Strand = Plus / Minus
Query: 122 aagtctgtctttgttaaggcttttatggctgtgatagacca--ccatgaccaaaagtaac 179
||||||||||| ||||||||||||||| |||||||||| | |||||||||||||||||
Sbjct: 973 aagtctgtcttcgttaaggcttttatgtctgtgataga--atgccatgaccaaaagtaac 916
Query: 180 ctggaggggggggaggtttatttcacctgtagttccacatcacacttcatcactaggaga 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 ctgga-gggggggaggtttatttcacctgtagttccacatcacacttcatcactaggaga 857
Query: 240 aatcagggaaggaactcaaatatggcaaaaactagaagcaggagctaatgcagaagccac 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 856 aatcagggaaggaactcaaatatggcaaaaactagaagcgggagctaatgcagaagccac 797
Query: 300 gaagaaatgctgtttactggaccattcctgtgatttgcagggtaggcatactcactcctt 359
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 796 gaagaaatgctgtttagtggactattcctgtgatttgcagggtaggcatactcactcctc 737
Query: 360 ccaagaccccaaggaccagtctgccttcatgctgggtttaggctgtgaggaactacctct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ccaagaccccaaggaccagtctgccttcatgctgggtttaggctgtgaggaactacctct 677
Query: 420 ggaaaggatcattatgggaaggaggcgatgctttcattgaataaaaggcttacataaaca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ggaaaggatcattatgggaaggaggcgatgctttcattgaataaaaggcttacataaaca 617
Query: 480 cacagaggatgccagtgttcaagaaagactcagggtagggatgtttaaacaatttggtca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cacagaggatgccagtgttcaagaaagactcagggtagggatgtttaaacaatttggtca 557
Query: 540 ctaatcttttgtgggggttgttttgattttgaga 573
|||||||||||||||| |||||||||||||||||
Sbjct: 556 ctaatcttttgtggggcttgttttgattttgaga 523
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_h02.g1 MSMg01no416_h02.g1 CHROMAT_FILE:
MSMg01no416_h02.g1 PHD_FILE: MSMg01no416_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:04 2005
(542 letters)
>mm_chr2_136021593_136022534
Length = 942
Score = 971 bits (502), Expect = 0.0
Identities = 532/542 (98%)
Strand = Plus / Plus
Query: 1 tctaactacgattatcttttggccttcttctagacaacatgccaacagacacgatgctca 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tctaactacgattatcttttggccttcttctagacaacatgccaacagtcacgatgctca 260
Query: 61 atgggaattatggatgtggttgtatagaattatgacaccatcaagaaggtacctgggtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgggaattatggatgtggttgtatagaattatgacaccatcaagaaggtacctgggtct 320
Query: 121 ccaatttcacaagctacacatatgtcacatgcagccctttctttaaaatggaacacatcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaatttcacaagctacacatatgtcacatgcagccctttctttaaaatggaacacatcc 380
Query: 181 aggtggctagttatttctagctcccagtgcactcagggattaccactaaactgttttatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtggctagttatttctagctcccagtgcactcagggattaccactaaactgttttatc 440
Query: 241 aaaaagttacatgattcactaatgtataggaactttgcattgatctgatgtaggagaaga 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaagttacatgattcactagtgtataggaactttgcattgatctgatgtaggagaaga 500
Query: 301 agtaggaggacgtgataaagaagcccaggtctctgaattgttgtgtggaggagactttac 360
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtcggaggacgagataaagaagcccaggtctctgaattgttgtgtggaggagactttac 560
Query: 361 ggttaagtggtagcatatgcactgaacccagcacaagcaaaagtttataagcctacggag 420
||||||||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||
Sbjct: 561 ggttaagtggtagcatatgcactgaaccctgcacaagcaaaggtttatacgtctacggag 620
Query: 421 ttgagcccatggagcttggaagtaatgagactggagggaaagtgtgtgaggctaattcac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgagcccatggagcttggaagtaatgagactggagggaaagtgtgtgaggctaattcac 680
Query: 481 atgctaggtttcaccactgatagcatgttgcttgacatgcttgaaaggacaggggaaaaa 540
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 681 atgctaggtttcaccactgatagcatgctgcttgacatgcttgaaaggacagaggaaaaa 740
Query: 541 gc 542
||
Sbjct: 741 gc 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
