Query= MSMg01no416_i07.b1 MSMg01no416_i07.b1 CHROMAT_FILE:
MSMg01no416_i07.b1 PHD_FILE: MSMg01no416_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:10 2005
(248 letters)
>mm_chr2_33660481_33661128
Length = 648
Score = 364 bits (188), Expect = e-105
Identities = 241/272 (88%), Gaps = 24/272 (8%)
Strand = Plus / Minus
Query: 1 ctcttctagggtggtcaaagcggctataggtgacgcagcctggccggctataggtaaggc 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctcttctagggtgatcaaagcggctataggtgacgcagcctggccggctataggtaaggc 243
Query: 61 agcctggcctgcagaagcctctgcagaggacggagcaagtgc---------------ttc 105
|||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 242 agcctggcctacagaagcctctgcagaggacggagcaagtgcagaggcctggagcagttc 183
Query: 106 tgaaagccaca-------ggcaccaaaggctgaagctggaattggccaatgtgggggtgt 158
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 182 tgaaagccacagggacagggcacaaaaggctgaagctggaattggccaatgtgggggtgt 123
Query: 159 gggctgggctaagctgac-agacctc-cagccatggggttcagtttaagacagaggaaag 216
|||||||||||||| ||| ||||||| |||||||||| |||||||||||||||||||||
Sbjct: 122 gggctgggctaagccgacaagacctcacagccatgggattcagtttaagacagaggaaat 63
Query: 217 tccccagtgggtttgcgttggctccactctca 248
|||||||||||||||| |||||||||||||||
Sbjct: 62 tccccagtgggtttgcattggctccactctca 31
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no416_i07.g1 MSMg01no416_i07.g1 CHROMAT_FILE:
MSMg01no416_i07.g1 PHD_FILE: MSMg01no416_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:10 2005
(467 letters)
>mm_chr2_33486941_33487807
Length = 867
Score = 872 bits (451), Expect = 0.0
Identities = 463/467 (99%)
Strand = Plus / Plus
Query: 1 cttcataaatcagcggcagggtgaaaggggtgcgcgttagaaagggcaggaccgtgtgcg 60
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 cttcataaatcagcggccgggtgaaagggttgcgcgttagaaagggcaggaccgtgtgcg 260
Query: 61 cgtattagagcgcgcggttcccaaatccgggctaaacccctggtgacaccgaaattcatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtattagagcgcgcggttcccaaatccgggctaaacccctggtgacaccgaaattcatc 320
Query: 121 aaccaccgccaatgcccctgctccatctacggaggagcccgggagcctgcataccctagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccaccgccaatgcccctgctccatctacggaggagcccgggagcctgcataccctagc 380
Query: 181 tgcttcactcccgggaaaagagaatcccgggaggcaggactggctgaggcgagctcctgg 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttcactccggggaaaagagaatcccgggaggcaggactggctgaggcgagctcctgg 440
Query: 241 aacactgcacatacccgggctgcggtgagccgcattgccagtcccgctggcaaagggggc 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacactgcacagacccgggctgcggtgagccgcattgccagtcccgctggcaaagggggc 500
Query: 301 tctcccctctgggaaggagttattctaacctttctgtcctccggtcagggctggcctctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcccctctgggaaggagttattctaacctttctgtcctccggtcagggctggcctctc 560
Query: 361 gggagcactcgccgctctccccctcctccccccaaccttccaggccggtgctctgaagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggagcactcgccgctctccccctcctccccccaaccttccaggccggtgctctgaagag 620
Query: 421 aggtatctagcatctagggcttcagcaagtcaggacaaggcgatcta 467
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggtatctagcatctagggcttcagcaagtcaggacaaggcgatcta 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
