Query= MSMg01no416_m18.b1 MSMg01no416_m18.b1 CHROMAT_FILE:
MSMg01no416_m18.b1 PHD_FILE: MSMg01no416_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:30 2005
(588 letters)
>mm_chr2_95295145_95296131
Length = 987
Score = 1069 bits (553), Expect = 0.0
Identities = 574/581 (98%), Gaps = 1/581 (0%)
Strand = Plus / Plus
Query: 8 gaattctgtgagtgttcgccagtgtgttcaaggtcaacggtgggctatcagcaactacac 67
|||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 208 gaattctgtgagtgct-gccagtgtgttcatggtcaacggtgggctatcagcaactacac 266
Query: 68 atgacaactccccacagataaagtgactttcccttcctcagcagccacataatcttaata 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atgacaactccccacagataaagtgactttcccttcctcagcagccacataatcttaata 326
Query: 128 tgtcagtgccagtgagcagtctcattacagtgtgtcattccaattcagttactatcagta 187
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 327 tgtcagtgccagtgagcagtctcattacagtgtgtcattcaaattcagttactatcagta 386
Query: 188 aatgtttgtgtttagacaaacagagaagtcctgtatagttcacaattttaaaagtcaaaa 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aatgtttgtgtttagacaaacagagaagtcctgtatagttcacaattttaaaagtcaaaa 446
Query: 248 tttcaaacagagaaacactgctttgttcaagggtcctgatggctcagtcacttccagact 307
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tttcaaacagagaaacactgccttgttcaagggtcctgatggctcagtcacttccagact 506
Query: 308 gaaggctgatggtgaaaatgtctagaaggacctgtaatgggagacaggaaactgaggact 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gaaggctgatggtgaaaatgtctagaaggacctgtaatgggagacaggaaactgaggact 566
Query: 368 aggaaagtctcattagttacaacatagtctcacaagaactaattgaggattccatgagaa 427
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 567 aggaaagtctcattagttgcaacatagtctcacaagaactaatttaggattccatgagaa 626
Query: 428 gcaccatatccatccataccatgacccagctatctctttgtattaaattatttcttcaat 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gcaccatatccatccataccatgacccagctatctctttgtattaaattatttcttcaat 686
Query: 488 ttttaagattataatataattacattacttctcccttcctattccttcttccaaacactc 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttttaagattataatataattacattacttctcccttcctattccttcttccaaacactc 746
Query: 548 cattggtgatctttctttccttgctttcaaaatcatggcct 588
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 cattggtgatctttctttccttgctttcaaaatcatggcct 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 987
Length adjustment: 10
Effective length of query: 578
Effective length of database: 977
Effective search space: 564706
Effective search space used: 564706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_m18.g1 MSMg01no416_m18.g1 CHROMAT_FILE:
MSMg01no416_m18.g1 PHD_FILE: MSMg01no416_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:30 2005
(458 letters)
>mm_chr2_95501628_95502485
Length = 858
Score = 835 bits (432), Expect = 0.0
Identities = 452/460 (98%), Gaps = 4/460 (0%)
Strand = Plus / Minus
Query: 1 cttcatcattcaaaaattgaaaaaaatggctatttttctatttcttgtactaatcaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cttcatcattcaaaaattgaaaaaaatggctatttttctatttcttgtactaatcaaatt 599
Query: 61 cagtactattatagtccttttaacacttttttcttatgttcctcttgaaactctcagctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cagtactattatagtccttttaacacttttttcttatgttcctcttgaaactctcagctc 539
Query: 121 ctatcccttctcttaaattccatggattgcatatttttgtcattaagctcaacatccaaa 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ctatcccctctcttaaattccatggattgcatatttttgtcattaagctcaacatccaaa 479
Query: 181 aataataattt--aacgagtgactctcccttattatccaatactaatgagaactattcct 238
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aataataattttca--gagtgactctcccttattatccaatactaatgagaactattcct 421
Query: 239 cctgaaaatagtatcttcactgtttcttgtaactaagagtccaagtagcaacaataacaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cctgaaaatagtatcttcactgtttcttgtaactaagagtccaagtagcaacaataacaa 361
Query: 299 attcatgatgttggcccacatcaggcattgttacattgccaaaatataggatatacctta 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 attcatgatgttggcccacatcaggcattgttacattgccaaaatataggatatacctta 301
Query: 359 atacaaaaatgtcctacatttttccttataatattgcccgtacctgacatttcttatata 418
||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 300 atacaaagatgtcctatatttttccttataatattgcccgtacctgccatttcttatata 241
Query: 419 cttcttcatgtaatgagactcttatggaaatacatcaatg 458
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cttcttcatgtaatgagactcttatggaaatacatcaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space: 379904
Effective search space used: 379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
