Query= MSMg01no416_n02.b1 MSMg01no416_n02.b1 CHROMAT_FILE:
MSMg01no416_n02.b1 PHD_FILE: MSMg01no416_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:31 2005
(583 letters)
>mm_chr2_69334400_69335382
Length = 983
Score = 992 bits (513), Expect = 0.0
Identities = 558/583 (95%), Gaps = 17/583 (2%)
Strand = Plus / Minus
Query: 11 gaattctattcatttacctatgtgattattattaactgtgtacacagag----------a 60
|||||||||||||||| |||||| |||||||||||||||||||||||| |
Sbjct: 764 gaattctattcatttagttatgtggttattattaactgtgtacacagagacacacacaca 705
Query: 61 cacacacacacatggacatacacggacatacacacacagagacacagacacacacacaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 cacacacacacatggacatacacggacatacacacacagagacacagacacacacacaca 645
Query: 121 caaacacacaactcatggtctcctgcaagtaagacaagcacactctctgacttagctact 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 644 caaacacacaactcatggtctcctgcaagcaagacaagcacactctctgacttagctact 585
Query: 181 tctccatcccctgactacagatacttatttgggcaaatctttgatttcaggctttcttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tctccatcccctgactacagatacttatttgggcaaatctttgatttcaggctttcttcc 525
Query: 241 tatcaagctttagctttacagtagtgataaaatgaaacacaatagtaattgtgctacttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tatcaagctttagctttacagtagtgataaaatgaaacacaatagtaattgtgctacttt 465
Query: 301 gtgaattagaatctagtaaggaaggcataaactaactaaatgatatctgagaagcaggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gtgaattagaatctagtaaggaaggcataaactaactaaatgatatctgagaagcaggag 405
Query: 361 gcaagttactcttcaccaagtgattgttcatcccctcaacccccaccttccctgcagatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gcaagttactcttcaccaagtgattgttcatcccctcaacccccaccttccctgcagatc 345
Query: 421 gactctcagtggttcattgctaaggttgtctatgggagggtgaagaactttcggactcag 480
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gactctcaatggtt-------aaggttgtctatgggagggtgaagaactttcggactcag 292
Query: 481 atcctgatagtttgtcaccgtgaatgaggagacagagatcgttcccgactgcaggcttat 540
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct: 291 atcctgatagtttgtcaccgtgaatgaggagacagagatcgttccccactgcaggcctgt 232
Query: 541 ggttactcaagacacctctgttgtgtgtgtagttattgctgca 583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ggttactcaagacacctctgttgtgtgtgtagttattgctgca 189
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_n02.g1 MSMg01no416_n02.g1 CHROMAT_FILE:
MSMg01no416_n02.g1 PHD_FILE: MSMg01no416_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:31 2005
(506 letters)
>mm_chr2_69144385_69145292
Length = 908
Score = 878 bits (454), Expect = 0.0
Identities = 494/508 (97%), Gaps = 2/508 (0%)
Strand = Plus / Plus
Query: 1 tcccacggaagtgcagtcaaaccatccgatttccattctcattattctccgaaagtaaat 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccacagaagtgcagtcaaaccatccgatttccattctcattattctccgaaagtaaaa 260
Query: 61 tttcctcattttccttatctgacgagccccagtgattacccacaaccttatctggaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcctcattttccttatctgacgagccccagtgattacccacaaccttatctggaaaca 320
Query: 121 aacaaaggtgt--ttagcactgtagcactaaacaggttaaacagatttgtctatactttc 178
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaaaggtgtgtttagcactgtagcactaaacaggttaaacagatttgtctatactttc 380
Query: 179 tcctatttctgaaaaatcacatttcccatggttatggttgggactagctgaaaagaagag 238
|||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tcctatttctgaaaaatcgcacttcccgtggttatggttgggactagctgaaaagaagag 440
Query: 239 tgaaggcgttgacaaagtgcctctcttgggcactagggtatgaactctgatacccctgct 298
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tgaaggcgttgacaaagtgcctctcttgggcactagggtatgagctctgatacccctgct 500
Query: 299 aatggggaggcaagctgacatttgtgggggtggcaaggatccagctttaattctaattct 358
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 aatggggaggccagctgacatttgtgggggtggcaaggatccagctttaactctaattct 560
Query: 359 ggcaggaggacaggctgctgtctttgcatttgacctattgggcttcactgtctccatcaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcaggaggacaggctgctgtctttgcatttgacctattgggcttcactgtctccatcaa 620
Query: 419 gtgaaagaaattcacaacgcccacactagaaaatggataatctacattcaaaaactttgc 478
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 621 gtgaaagaaattcacaacgcccacactagaaaatggatgatctacattcattcactttgc 680
Query: 479 gtaacccttctcggctttctccttctgt 506
||||||||||||||||||||||||||||
Sbjct: 681 gtaacccttctcggctttctccttctgt 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 908
Length adjustment: 10
Effective length of query: 496
Effective length of database: 898
Effective search space: 445408
Effective search space used: 445408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
