BAC Information

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BAC

Clone NameMSMg01-416N16
Chromosome2 (Build37)
Map Location 142,077,243 - 142,077,822
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor, LOC668915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416N16.T7 (MSMg01no416_n16.b1)MSMg01-416N16.TJ (MSMg01no416_n16.g1)
ACCAG512572AG512573
length7041,526
length of high quality
(start - end)		591 (16 - 606)---
definitionCHROMAT_FILE: MSMg01no416_n16.b1 PHD_FILE: MSMg01no416_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:34 2005CHROMAT_FILE: MSMg01no416_n16.g1 PHD_FILE: MSMg01no416_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACTATATCGAGAGGATCCGCGGAATTCATAGGAGATACCAGCTTT
GCCCTCAGCTTAAATTTTAAAGTATAACTTTGTAAATTTTGTCTTCCCAG
AATTTTACCATCATATTTAGATAATAAATATTAGCTGTCTTTCCAGGGAG
GCAATAAAAGATTGATCTTGGGACCCTTTGCAATAGCTCTTCGTTAGCTG
TGGCAGTACTACACAAAGTGCTGTGGTCACAGCTGCTTCTTGAGGCTGTT
AGAAGAATTACACTTAATAGTCTATACAGAGTATTTTCAAACTGAATAGA
AGGTAGGCAACAACCAGCACATGCTAGCTGTTGCTCGCATAGCTATGTAA
TTAAACAAAGCACAAACATTATCATACTAATGTCAGTGGCAATCTTCAGG
ACCATTTCCCTCTTATGTAATCAAATTTCATTTCCAAATGTGTGTTTCTA
GACCATTTTGAAATGTGTGAAATGAATATATAGATGAGAAGAAAACAAAT
TCAGGCGAGACTGATCTCCTTCCACATAAGACAGAGCTAGCTTAGGACTC
TGTTGGTTAAGGGCCTGCCCTACAAGCTTAGGAATCAAGTTTGGTTCCTT
TGCAAAAATGCCAGGGGCAGTACTGGGTGCCTGTAACTCCACCTAAGGAG
GATTGGCTTGGTGGCCAGCCATTCCAGATGAATGAGAGACCTTGTCTCAA
TCAN

TTTCCCTTCTTTTTTTTCGCTTGCGGCTCNATCATCACTCCACCCAAACA
AGTCAGCTCGTCTGCCNCGCCGCGCANCTCACACATTGTCATCCCCGGCC
ATAAAGCCTAGGCTGGGGTGCGCCGTGGTTCTCCTCCCTAATACTATAGA
TCGGACATTCGTATAACAATAGTGATCCCCGCCGTTATAATTCTTCTCCC
GGGNACTTCCTTGTTCCTCTTGTCGTCCTCAGCTGCGTTATACGAGCAGA
ATGCATTTTTGTCCCATCGCCTCTCTTTTCTCCCGCAGTGTTCGCACCTC
GAGTTTAACTTATGTGTATCTGCGACCGCGCCTCCCCGTGCCTCCATTCT
TCCTCGCCGGTGTGCAGTACTCATATGTCCGGCGCGAGGTTGACAGAGCT
CGAGAGGGCGCTACCCTACTATATATGTCAATCTCTCGATGCGACCCATA
GCTGACTCTGCAATTATGTGTAGACACGATTACGCACGCCTATTCAGCGA
TCAGTCCGTAGCGTTATATCGCATGAACATGAACTATAGCAGACGTACTA
ATAACGTTAATCATCTATCACACACCTATGCATATCTGTGCTATCTNCCA
CACATATGTCGGTTTATCGCGTGTCAGTGAACTTCTGACGTAACTTAATG
CAGTAGTTCATTGAATTTGTGTTGTATTGATGTCATACGAGTGAGAGCGC
CAGATGCGCTCACGCTAGAAAAGTACCCATCCTCCCTACTACTATGTATC
ACATGACTTAGATGCGTTCTCACCAGCTCGTCTTCGCCNCTTATTCGCTG
CCTGTACATACACTACTCNCAACGTCGCGCGCGCCTCTCTTACACGCAAC
GCTCGGCATCTTGAGCGCTATAGTAGTGCAAGCATATTCTAGCATCTCGC
CCGTTGACACGCAGCTCCTCCTCATCTTTCCGGTATCCACGTGCATCTTG
AGTGACATTATGCGACGGTCAGTGAGCATGTACCTATTACTCTGATACAC
CTGTATCAACGCGCGCCTCCATGCTACCGCATGAAGCACATGTCTGCACA
GCTGCGCACGCTTCTCCGATGACACTTCTGCACTGCTTGTACACTATAGA
CGCCTCGCAACGATGATATGAGTATCATAACTACATGTTTAGCGACCTCG
CACATCTGTCTTCACACTCATATAATATGTCGATGATCAGAGCCAGCTCG
CTCGTCTGTCATGGCAGTGTGTCCTACGCTACAGTCTGCCACNACTGATT
TACATATCTTGCGACAATGCGTGTATGTTGTCGAAGCTGTTGCAGCCCGA
TCCACCCTCATCTAATCTCCGCTCTACACATACACTTATGTGGAATCATT
CGCTATTCAACCTATATATGCTTTCGTTGATGATGTTGGACGCGCCGACA
CTACACCTGTGACATNGACTATACTACTCATAGATCTCACTCAATCATGA
CGTCGTGTCGCACAATACACTATGCCGGGCCGTGACCACGCGAGAGAGCG
GGCGCTCTTCATACTATCACAGTCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_n16.b1 MSMg01no416_n16.b1 CHROMAT_FILE:
MSMg01no416_n16.b1 PHD_FILE: MSMg01no416_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:34 2005
         (591 letters)



>mm_chr2_142077032_142078022
          Length = 991

 Score = 1091 bits (564), Expect = 0.0
 Identities = 576/580 (99%)
 Strand = Plus / Plus

                                                                       
Query: 12  gaattcataggagataccagctttgccctcagcttaaattttaaagtataactttgtaaa 71
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaattcataggagatagcagctttgccctcagcttaaattttaaagtataactttgtaaa 271

                                                                       
Query: 72  ttttgtcttcccagaattttaccatcatatttagataataaatattagctgtctttccag 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttttgtcttcccagaattttaccatcatatttagataataaatattagctgtctttccag 331

                                                                       
Query: 132 ggaggcaataaaagattgatcttgggaccctttgcaatagctcttcgttagctgtggcag 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ggaggcaataaaagattgatcttgggaccctttgcaatagctcttcgttagctgtggcag 391

                                                                       
Query: 192 tactacacaaagtgctgtggtcacagctgcttcttgaggctgttagaagaattacactta 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tactacacaaagtgctgtggtcacagctgcttcttgaggctgttagaagaattacactta 451

                                                                       
Query: 252 atagtctatacagagtattttcaaactgaatagaaggtaggcaacaaccagcacatgcta 311
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 452 atagtctatacagagtattttcaaactgaatagaaggtaggcagcaaccagcacatgcta 511

                                                                       
Query: 312 gctgttgctcgcatagctatgtaattaaacaaagcacaaacattatcatactaatgtcag 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gctgttgctcgcatagctatgtaattaaacaaagcacaaacattatcatactaatgtcag 571

                                                                       
Query: 372 tggcaatcttcaggaccatttccctcttatgtaatcaaatttcatttccaaatgtgtgtt 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tggcaatcttcaggaccatttccctcttatgtaatcaaatttcatttccaaatgtgtgtt 631

                                                                       
Query: 432 tctagaccattttgaaatgtgtgaaatgaatatatagatgagaagaaaacaaattcaggc 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tctagaccattttgaaatgtgtgaaatgaatatatagatgagaagaaaacaaattcaggc 691

                                                                       
Query: 492 gagactgatctccttccacataagacagagctagcttaggactctgttggttaagggcct 551
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aagactgatctccttccacataagacagagctagcttaggactctgttggttaagggcct 751

                                                   
Query: 552 gccctacaagcttaggaatcaagtttggttcctttgcaaa 591
           ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 752 gccctgcaagcttaggaatcaagtttggttcctttgcaaa 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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