Query= MSMg01no417_b05.b1 MSMg01no417_b05.b1 CHROMAT_FILE:
MSMg01no417_b05.b1 PHD_FILE: MSMg01no417_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:50 2005
(560 letters)
>mm_chr2_180026251_180027210
Length = 960
Score = 998 bits (516), Expect = 0.0
Identities = 534/540 (98%)
Strand = Plus / Plus
Query: 21 ggaaaagccacatgcttcatgccagcagtgtaggcttatctctcgaccagagctgaagtt 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ggaaaagccacatgcttcatgccagcagtgtaggcttatctctcgaccagagctgaagtt 280
Query: 81 tggaccctgcaattctgtcccgtttccttggtccccaggtcctgccccagccagttgaat 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tggaccctgcaattctgtcccgtttccttggtccccaggtcctgccccagccagttgaat 340
Query: 141 cctagctcttctgtgacttgggtcacaatctctccgggccatggacttgtctgcacagta 200
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 341 cctagctcttctgtgacttgggtcacaatctctccgggccagggacttgtctgcacagta 400
Query: 201 tgctttgtaggcagctcagaaggaaccctgaagtgaggttgcagctaaagcttttgccag 260
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 401 tgctttgtaggcagctcagaaggaaccctgaggtgaggttgcagctaaagcttttgccag 460
Query: 261 ggtctacctcagtaggcactcagctgtgagaccctgcttggggcttgaaggatagatagg 320
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct: 461 ggtctacctcagtaggcactcagctgtgagaccctgcttggggcttgatggataaacagg 520
Query: 321 gaagtggtgttaaccagtgttaacctgtcagtaacttagcagagactgctttctcagagg 380
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 521 gaagtggtgttaaccagtgttaacctgtcagtaacttaacagagactgctttctcagagg 580
Query: 381 tcagttcacacacactggctctgcagcccagcagccagactgatgtcctggcagctgtat 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tcagttcacacacactggctctgcagcccagcagccagactgatgtcctggcagctgtat 640
Query: 441 ttatttataaccaattgcaactgggctggccagggaataaacaacggagccaagctctga 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ttatttataaccaattgcaactgggctggccagggaataaacaacggagccaagctctga 700
Query: 501 aatggaaaactcctcgctgatccagaggctgggttctgatgtccatgcctctgctccacg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aatggaaaactcctcgctgatccagaggctgggttctgatgtccatgcctctgctccacg 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_b05.g1 MSMg01no417_b05.g1 CHROMAT_FILE:
MSMg01no417_b05.g1 PHD_FILE: MSMg01no417_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:51 2005
(526 letters)
>mm_chr2_180242751_180243676
Length = 926
Score = 700 bits (362), Expect = 0.0
Identities = 473/517 (91%), Gaps = 26/517 (5%)
Strand = Plus / Minus
Query: 33 atccagctgtatgggctcactttcctgaagcagcttgaatcagaaataatccctcccag- 91
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 atccagctgtatgggctcactttcctgaagcagcttgaatcagaaataatccctcccagc 867
Query: 92 -ccccccccccttttctgcctgttttggatgctggccagaaccaaagcta----cacaca 146
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 866 cccccccccccttttctgcctgttttggatgctggccagaaccaaagctaccctcacaca 807
Query: 147 cacaca--caca--caca--caca--caca-g---a-g-aga-g-aga-g-aga-g-aga 186
|||||| |||| |||| |||| |||| | | | | | | | | | | | | | |
Sbjct: 806 cacacacgcacacgcacacgcacacgcacacgcacacgcacacgcacacgcacacgcaca 747
Query: 187 gagagagagagagagagagagagctatgtgtctgctacttttctgactcccctgaaggct 246
| | | | | | | | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cacacacacacacacacacagagctatgtgtctgctacttttctgactcccctgaaggct 687
Query: 247 taaatagctttttcccctccatttttctcccggcagcttctgagattgacactgggcctg 306
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 taaatggcttttccccctccatttttctcccggcagcttctgagattgacactgggcctg 627
Query: 307 ccctgggagtttttctctttagactttaatgggattagccttgagcttgtatctgaatct 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccctgggagtttttctctttagactttaatgggattagccttgagcttgtatctgaatct 567
Query: 367 gaatccatccttaaattcttttgttcgtgagactaagaatccaaagaggggaccttgatt 426
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gaatccattcttaaattcttttgttcgtgagactaagaatccaaagaggggaccttgatt 507
Query: 427 tcccctgtatcatctggtgatcacagcggaacctanagggatgacccaaaagaagcaaag 486
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 506 tcccctgtatcatctggtgatcacagcggaacctaaagggatgacccaaaagaagcaaag 447
Query: 487 gccaaggttttaacaggcagtggggcaggcatgctgg 523
|||||||||||||||||||||||||||||||||||||
Sbjct: 446 gccaaggttttaacaggcagtggggcaggcatgctgg 410
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
