BAC Information

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BAC

Clone NameMSMg01-417E13
Chromosome2 (Build37)
Map Location 35,499,617 - 35,499,881
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194
Downstream geneDab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417E13.T7 (MSMg01no417_e13.b1)MSMg01-417E13.TJ (MSMg01no417_e13.g1)
ACCAG512901AG512902
length763751
length of high quality
(start - end)
271 (48 - 318)441 (74 - 514)
definitionCHROMAT_FILE: MSMg01no417_e13.b1 PHD_FILE: MSMg01no417_e13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:07 2005CHROMAT_FILE: MSMg01no417_e13.g1 PHD_FILE: MSMg01no417_e13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCG
CGGAATTCCTCTCTTTCAATCAACACAGAATCAAATTATGACATGCCCTA
GACTGTTCTATAAAAGATACCAAAATAAGGGTGGAGGGTACATTGTGTGC
ACATGCCAGACAGCTCGAATCCAGCCTCCTCTCCCGGCTCTGGTGGCCCC
CTAGGCTCTTTCCTCTACCTGCCCCCTCCCTCAAAGAATGGGGCCCCCTG
TGGTCCCCAGGGAGCAGGGAGCTGCCAAGGGATCGGATACCTAGAGCAAG
GGAGGCTGGATGTTCTCCTTTTTTTTGAGGCTCCAGGAAGGTGGGTGCGG
GGTCGCAGAACAGCCCCGCATGCCGAGGTGGTGATGGTGGTGGCAGTGGC
GGTGGTGACGCATAGATAGTTACCGTGACCCGGAACGGTTTTGAAGCCGA
CGTCTCTCTGCTGGAGTTTTTCTCTGACATGCTGCCATGAAGGTTCCGCC
GGGAGTCCGGCCTTTTTTGTTTCGCCTCTGTCTTACAATGTTAGTCATCG
TGCATTCGTTCCCAACCTCCTACATACTGTACCCTCTGCCATCCCCCCCT
TCCTCGGGACTGTATAACACATACCGTTATCACCTGTTTATTTACCCTAC
CCTTTTTTTTTCCCTCCCTCCATCCTTTTCCCTTATTTTTCCCGTTTTCC
CCTCTATTGCCCTCCAATCACCATAATTCTTTTATTCCTCCTTTACACAT
TGCGCCTATTTCN
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCCTGGGCTACACAGTGAAT
TCCAGGCTAGCCTGGGCTACAGAGGAGGATCATTTCATTCAGAAAAAAAT
AAAATAAAATAAAATAAAAAATAAAGCTTATCTTTAGGGGAAGAGGCTCA
CAAGGCCCCACCTGTCTCTGAGGACGGGTAGTAAGTTAATGGTTGCTGAT
GGAGGCAGAACACTTTGTCCTTTGGTGTAGTCACTGCTAAGGCAGACATG
ATTCTGTAAGTAACCCTGATTAAACTTACTGGTACACCAACAGAAATCAA
TATGAAAGTTGAATGGGGGACAAGTTGAGAAAACAAAGGAGATGGTGGGG
GACTCCATAGTTAAGAGTACTGGCTGCTCTCAGGGGACTCTGGGTTCACT
TCCCAGTCCCACATGATCAACTGCAACTCCAGGTTTGGGGGAATCTTGTG
CTCACTTCCGGCCTCCGTGAGTACCAGGCACACACATGGTACAAAGACAG
ACATGCTAGCAAAACACCCATACGCATACACAAATTTTTCATTAAAAAAA
TTAAACTAAAGCCAGACATGGTGGCACATACCTTTAATTCTAGCACCCGG
GAGGTAGAATCAGGAGGGTCCTAAAATCGAGGGCAGCCTGTACTCCATGT
GAATGGTACAACGCTCTTCTGCTCACAGATAAAAACTGTAGAAAACCAAA
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_e13.b1 MSMg01no417_e13.b1 CHROMAT_FILE:
MSMg01no417_e13.b1 PHD_FILE: MSMg01no417_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:07 2005
         (271 letters)



>mm_chr2_35499412_35500081
          Length = 670

 Score =  474 bits (245), Expect = e-138
 Identities = 261/267 (97%), Gaps = 3/267 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcctct-ctttcaatcaacacagaatcaaattatgacatgccctagactgttctat 64
           |||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gaattcctctccttcccatcaacacagaatcaaattatgacatgccctagactgttctat 411

                                                                       
Query: 65  aaaagataccaaaataagggtggagggtacattgtgtgcacatgccagacagctcgaatc 124
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aaaagataccaaaataagg--ggagggtacattgtgtgcacatgccagacagctcgaatc 353

                                                                       
Query: 125 cagcctcctctcccggctctggtggccccctaggctctttcctctacctgccccctccct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cagcctcctctcccggctctggtggccccctaggctctttcctctacctgccccctccct 293

                                                                       
Query: 185 caaagaatggggccccctgtggtccccagggagcagggagctgccaagggatcggatacc 244
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 292 caaagaatggggccccctgtggcccccagggagcagggagctgccaagggatcggatacc 233

                                      
Query: 245 tagagcaagggaggctggatgttctcc 271
           |||||||||||||||||||||||||||
Sbjct: 232 tagagcaagggaggctggatgttctcc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 670
Length adjustment: 9
Effective length of query: 262
Effective length of database: 661
Effective search space:   173182
Effective search space used:   173182
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)