NNCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTGAGAATCTTAATCAATTTCATTTATATCATACTGAACTT
AGACCCACAGCGAAAACCAGCTGAAAACCATGCCCACGATTCTTTTTATT
TTTTATTTTTGGCAGTCATTTCAAGCATAACAAAGCCAGAGGCGGCTACT
TTGGAGTAAGATTTGGCAGAAACCGTTTGACTTGATAGCAAAGACAATGT
AAACAACTGGTGTAGACTTCCTGCATTGGAACTTGGAGACAAGTCTTTAT
TTATGGATAAATACTTTATTTATTTATTTATTTATTGTTTTTCGAGACAG
GGTTTTTCAGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGG
TTGGCCTCGAACTCAGAAATCCGCCTGTCTCTGCCTCCCCAGTGCTGGGA
TTAAAGGCACTACCACGCCCGGCTCGGATAGATACTTTTAGCTGTCTCAA
ATATCAGCACTCTAGATAGTACCTTTTTACCGATCTTCAGGTTATATTAA
GCTTTTTGGTTTTATTTTATTGTGTGTGTGTTTGTGTAAAATGATGTGCA
AGGTATATCCAGTCCTTACATTAAAAAAAAAAAAAAAAAAAAAAAAGGGG
CTGGTGAGATGGCTCANTGGGTAAAAGCACCCGACTGCTCTTCCAAAAGT
TCGGAGTTCGAATCCCAGCGGGCAATGGTGGCTCACAACCATCCGTAACG
A

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACTGATTGAGATTTGTAATT
TCCCTGTAGTCATACAGAAAATGCTGTTTTATAATGCTAAAAGATTGAAC
TCAGGGCCTTGCCCATTCTAGGAAGACATGTTATGACCTGTGCTATACCC
AAGGTCTTTAATTCTGGTATTTCATTGAAAGGATTGTGTTTTGGGTCGGC
CTGATGCTGCTTGTATTCTAATGCTAATATTGGGCCCCCAAGACTGCTTG
CCCCAAAGATGAGAGGGTCTGCCCATAGATGCTCAGTGACCCTGTCCTCA
ATTTATTTCTTTTTTTTTTTTTTTTTTAAAGATTTATTTATTTATTATAT
GTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCGTCAGATC
ATGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTC
AGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACC
AGCCCCTCAATTTATTTCTGATGGGGAAATAAAGATGCCAACATCCAATA
GCTGGGCAGAAGAGACAGGGGGAGTTTAGGTTTTGAGGGCTTGGGGTTGG
ACAAACATCTCCTGTTTACAACGTTTATTCTTACGAATTACAAGCCCCCT
CTGTTTATCGCATCCCATAAACTCCCCCCGTTGCTTTCCCCCTTTTATAA
G

Query= MSMg01no417_f02.b1 MSMg01no417_f02.b1 CHROMAT_FILE:
MSMg01no417_f02.b1 PHD_FILE: MSMg01no417_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:10 2005
         (610 letters)



>mm_chr2_144201701_144202710
          Length = 1010

 Score = 1006 bits (520), Expect = 0.0
 Identities = 568/588 (96%), Gaps = 9/588 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgagaatcttaatcaatttcatttatatcatactgaacttagacccacagcga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gaattcttgagaatcttaatcaatttcatttatatcatactgaacttagacccacagcga 255

                                                                       
Query: 65  aaaccagctgaaaaccatgcccacgattcttttt--attttttatttttggcagtcattt 122
           ||||||||||||||||| |||||||||| |||||  |||||| |||||||||||||||||
Sbjct: 256 aaaccagctgaaaaccaggcccacgatttttttttaatttttaatttttggcagtcattt 315

                                                                       
Query: 123 caagcataacaaagccagaggcggctactttggagtaagatttggcagaaaccgtttgac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 caagcataacaaagccagaggcggctactttggagtaagatttggcagaaaccgtttgac 375

                                                                       
Query: 183 ttgatagcaaagacaatgtaaacaactggtgtagacttcctgcattggaacttggagaca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttgatagcaaagacaatgtaaacaactggtgtagacttcctgcattggaacttggagaca 435

                                                                       
Query: 243 agtctttatttatggataaatactttatttatttattta--ttta-----ttgtttttcg 295
           |||||||||||||||||| ||||||||||||||||||||  ||||     ||||||||||
Sbjct: 436 agtctttatttatggatagatactttatttatttatttaattttatttttttgtttttcg 495

                                                                       
Query: 296 agacagggtttttcagtatagccctggctgtcctggaactcactttgtagaccaggttgg 355
           |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agacagggattttctgtatagccctggctgtcctggaactcactttgtagaccaggttgg 555

                                                                       
Query: 356 cctcgaactcagaaatccgcctgtctctgcctccccagtgctgggattaaaggcactacc 415
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 556 cctcgaactcagaaatccgcctgtctctgcctcccgagtgctgggattaaaggcactacc 615

                                                                       
Query: 416 acgcccggctcggatagatacttttagctgtctcaaatatcagcactctagatagtacct 475
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 acgcccggctcagatagatacttttagctgtctcaaatatcagcactctagatagtacct 675

                                                                       
Query: 476 ttttaccgatcttcaggttatattaagctttttggttttattttattgtgtgtgtgtttg 535
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 676 ttttaccgatcttcaggttatattaagctttttggttttattttagtgtgtgtgtgtttg 735

                                                           
Query: 536 tgtaaaatgatgtgcaaggtatatccagtccttacattaaaaaaaaaa 583
           ||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 736 tgtaaaatgatgtgcaaagtatattcagtccttacattaaaaaaaaaa 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)