Query= MSMg01no417_k08.b1 MSMg01no417_k08.b1 CHROMAT_FILE:
MSMg01no417_k08.b1 PHD_FILE: MSMg01no417_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:35 2005
(299 letters)
>mm_chr2_43460191_43460885
Length = 695
Score = 516 bits (267), Expect = e-151
Identities = 287/295 (97%), Gaps = 4/295 (1%)
Strand = Plus / Minus
Query: 1 ttctttctgataggccaaaaaattttaaaagattaaatcagctattatttatattctgat 60
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 491 ttctttctgataggcc-aaaaattttaaaagattaaatcag---ttatttatattctgat 436
Query: 61 ataaaaaggtttgatatcttaaatcacttatttatatacacagagatatgatatacagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ataaaaaggtttgatatcttaaatcacttatttatatacacagagatatgatatacagat 376
Query: 121 agagtaacttaatgtagaattactaatatgcatgggagaaacacttttgttataggtagt 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 375 agagtaacttaatgtagaattaataatatgcatgggagaaacacttttgttataggtagt 316
Query: 181 gttataaagctagaaagttgttcagaattaaatgccatccttaaagtcacttgggtaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 315 gttataaagctagaaagttgttcagaattaaatgccatccttaaagtcacttgcgtaaaa 256
Query: 241 agtcaccctattgttaactctacatgagctgctaatagagcctatatttccctat 295
|||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agtcaccctactggtaactctacatgagctgctaatagagcctatatttccctat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 695
Length adjustment: 9
Effective length of query: 290
Effective length of database: 686
Effective search space: 198940
Effective search space used: 198940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_k08.g1 MSMg01no417_k08.g1 CHROMAT_FILE:
MSMg01no417_k08.g1 PHD_FILE: MSMg01no417_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:35 2005
(462 letters)
>mm_chr2_43324147_43325009
Length = 863
Score = 754 bits (390), Expect = 0.0
Identities = 444/462 (96%), Gaps = 3/462 (0%)
Strand = Plus / Plus
Query: 2 tgtctgcagatgtcctgacatggccaaaagacacttttttgggtctggtcattcttgtcc 61
||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||
Sbjct: 204 tgtctgcagatgtcctgacatggccaaaagaca-tttttt-ggtctggtcatccttgtcc 261
Query: 62 tctgactctttcaaactttctgcttccttttctaagatggtccttgtgtgggaggaaatg 121
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 262 tctgactctttcaaactttctgcttcctcttctaagatggtccttgtgttggagggaatg 321
Query: 122 ggataggaatgtctcatttgcagttgaggcgtccacaatcacttgttctccacactttaa 181
||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 322 ggatacgattgtctcatttgcagttgaggcgtccacagtcacttgttctccacactttaa 381
Query: 182 cccactgtgaatttcttcattaaatgctctgcattgcacaaagaaacttctccaatgatt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cccactgtgaatttcttcattaaatgctctgcattgcacaaagaaacttctccaatgagg 441
Query: 242 tctagaagctgcattaatctatgtatatatagacaagagactaaacaggaaatcagaaag 301
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 442 tctagaagctgcattaatctatgtatatatagataagagactaaacaggaaatcagaaag 501
Query: 302 taaaaggggaatcttatt-agtttatttctcctttggtttgacagtaaaagtaaattgct 360
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 502 taaaaggggaatcttatttagttgatttctcctttggtttgacagtaaaagtaaattgct 561
Query: 361 aaagatgtagagaaactgtgtgcttctgcacttctaccacgtgacaggggactaactttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaagatgtagagaaactgtgtgcttctgcacttctaccacgtgacaggggactaactttc 621
Query: 421 tagtgtcagtcctaccctggttacacattgtttgatggctca 462
|||||||||| ||||||||| |||||||||||||| |||||
Sbjct: 622 cagtgtcagtcttaccctggtcacacattgtttgatagctca 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 863
Length adjustment: 10
Effective length of query: 452
Effective length of database: 853
Effective search space: 385556
Effective search space used: 385556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
