BAC Information

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BAC

Clone NameMSMg01-417K10
Chromosome2 (Build37)
Map Location 81,461,015 - 81,461,411
singlet/doubletsinglet
Overlap genenone
Upstream geneDusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
Downstream geneLOC100040704, Zfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417K10.T7 (MSMg01no417_k10.b1)MSMg01-417K10.TJ (MSMg01no417_k10.g1)
ACCAG513181AG513182
length749782
length of high quality
(start - end)
389 (72 - 460)172 (80 - 251)
definitionCHROMAT_FILE: MSMg01no417_k10.b1 PHD_FILE: MSMg01no417_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:35 2005CHROMAT_FILE: MSMg01no417_k10.g1 PHD_FILE: MSMg01no417_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTACATTTTCCTCAGAAGGAAAACAAGAGAAGACTGACTTCT
AGACAGCTAAGAGGAGGGTCTCAAAGCCCAGTGACACACACTAACAAGGC
TATCCCTACTCCAAAAAGGCCACACCTCTTAATAGTGCCATTCCCTTGGC
AAACCACATTCAAACCGGAACATGCACCTCTATGCCTTGTGAGTATAAAT
TATATCAGTATAAACCTTAAATCTATAATATTATGTTGTTTATATAAAAA
CTCCAATATTATTTTAAGTAGTCTATATGATTAACTGACATGAAAATTTA
TGTTTTTACTCTTTTAATATTAATATTGCCAGTTATGCCATAATTTTGCT
CCCAATATTTCTATTTTTGATTAGAATAGGCTTTTGACAAAATTTACCAT
CTTTTCATGATGAAAGTCGTAAAAACCTAGCAGCGAACCAGCATATCTCG
CCACTATAAAGGCAATATACAAGACTACAGTCATCACCATTCTAAGTGGA
GACATACTCCTAACATTTCCACTACTATCATCAGCAAGATAAGAAAGTTC
ATTCTTTGCATTTCTCTAACAGCACCGTGATTGATGTTCTACGAAAAACG
ATATTACTTACACATTTCATCCTAGACAACCATTATCTTACAATTAACAA
CTATCTTTCTCAATTTCCTTCACTATACTCCACCTATATACCTACACTC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGCTCAACAGGCTGAAG
TGCCCAAGTGAGAACACCTTAGTCCCTCTTGGGAGAGGGAAGAAAGCAAT
CACAAGTGGGAATGGAGTGAGGGACCTGGGAGGGAAAGTGGACAGTGGTG
GGAGTAGGAGATGGGAAAGGGGAATCTGATCTGGTATTGGGTGAAGGATT
TTTTTGTATTCCTGAAGGTCCTCAGACATATTGTATTTTTGATTTCTTAG
GACACACGGGATTGTTTTTTTTTTTCAGGAGACACTCCATACCTAGGACG
TGAGATATTTCCCTCTCTCTTCCTTTGTCTCTCATCCTTATTTCGCCCTT
CCCTTGTTCATTTTCTTTTTTCCTTTTATCTCCCGTCCTACTTTTTTTTC
CTTTTTTTTTTCCCCCCTTTTTCGTCTCTTACTTTATTTTTTCCTTTCTT
ACCTCCCTTTTGTCTCCTTTCCCTTTTTTCCTTTTTTTTTCTTCTCTATT
TTCTCTTTTTTTTTCCCCCTTCCTTTCTTTCCTTTCCTTTCCCTTTCTTT
TTCCTTTTCCCCATTTTTTCTTCCCCCCTTCTTATTCCCACCCTCTCTCA
CCTTCCTTATTTTTTCCCTTACCTTATCCATCCTTTTTATCTCTTTTTTC
CTCTTCCTCTTCTTTCTTAATTTTCTATTTTACCCCCCCCTTTTTTCTTT
TTGTTCCCCCTTTTTTGCTCCCTTTTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_k10.b1 MSMg01no417_k10.b1 CHROMAT_FILE:
MSMg01no417_k10.b1 PHD_FILE: MSMg01no417_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:35 2005
         (389 letters)



>mm_chr2_81460670_81461458
          Length = 789

 Score =  687 bits (355), Expect = 0.0
 Identities = 383/397 (96%), Gaps = 8/397 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaggaaaacaagagaagactgacttctagacagctaagaggagggtctcaaagcc--- 57
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 742 agaaggaaaacaagagaagactgacttctagacagctaagaggagggtctcaaagcccag 683

                                                                       
Query: 58  -----cagtgacacacactaacaaggctatccctactccaaaaaggccacacctcttaat 112
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ccccacagtgacacacactaacaaggctatccctactccaaaaaggccacacctcttaat 623

                                                                       
Query: 113 agtgccattcccttggcaaaccacattcaaaccggaacatgcacctctatgccttgtgag 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 622 agtgccattcccttggcaaaccacattcaaaccggaacatgcacctctatgccttgtaag 563

                                                                       
Query: 173 tataaattatatcagtataaaccttaaatctataatattatgttgtttatataaaaactc 232
           |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 562 tataaattatattagtataaaccttaaatctataatattatgtcgtttatataaaaactc 503

                                                                       
Query: 233 caatattattttaagtagtctatatgattaactgacatgaaaatttatgtttttactctt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 502 caatattattttaagtagtctatatgattaactgacatgaaaatttatgtttttattctt 443

                                                                       
Query: 293 ttaatattaatattgccagttatgccataattttgctcccaatatttctatttttgatta 352
           |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 442 ttaatattaacattgccagttatgccataattttgctcccaatatttctacttttgatta 383

                                                
Query: 353 gaataggcttttgacaaaatttaccatcttttcatga 389
           |||||||||||||||||||||||||||||||||||||
Sbjct: 382 gaataggcttttgacaaaatttaccatcttttcatga 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)