BAC Information

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BAC

Clone NameMSMg01-418D14
Chromosome2 (Build37)
Map Location 4,813,251 - 4,813,704
singlet/doubletsinglet
Overlap geneSephs1
Upstream geneLOC100040163, LOC666944, 1700080N15Rik, Frmd4a, EG634452, Prpf18, LOC623483, E130319B15Rik, LOC666973
Downstream genePhyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik, Mcm10, Optn, Ccdc3, LOC100040292, Camk1d, LOC666599, Cdc123, Nudt5, Sec61a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418D14.T7 (MSMg01no418_d14.b1)MSMg01-418D14.TJ (MSMg01no418_d14.g1)
ACCAG513613
length736735
length of high quality
(start - end)
---454 (76 - 529)
definitionCHROMAT_FILE: MSMg01no418_d14.b1 PHD_FILE: MSMg01no418_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:22 2005CHROMAT_FILE: MSMg01no418_d14.g1 PHD_FILE: MSMg01no418_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTATTTAGGTTATTTCTATTTATTT
TCTTTTACGTGCATGAATATTTGCCAGCATGCACGTGAGTCCACTGCATG
TGTGCCTGGAACTGCAGCTAGAGATAGTTGTGAACTGTCATGTGGGTGCT
GAGCGCCAAATTTTTATGCATAATCTCAACCATTGAGCCATCTCTGTGAC
CCAGTTATTTAGTTTATGTTAGCAGGGTGTGTTTATTTCTTTTCTCTTTC
TGTATGCGCTCCCTAGTCAGTTTGTCATGATTTACTGATAGAAAGCCCAG
TTGTCTGTGGTCTTTTTTCCTAGCAGTTTGCACTTTAAACAGTAGTTCTC
ACAGGAAGGGCTTCTCTGAGGATGGGTTACATCGAATCTCTCAGCGAGTC
TTCCCACTTCTTGGCAAACAAAATTCTTTTTGAAAACAGGGCTGTGTTTG
TATGGTTAGCTTGTCTGGTGTCCTTCAGGACCAGCCAAGAGTTGGCCTCT
AATAGTCACCCATGTCTGGGCCAGGCCTGTGGGCAAATGGCACATTATAA
CCCCTACCAGTTAAGAAACTGGGCTTCGCAAGGCAGTGGTAGCGCATGCC
TTTAATCCTAGCACTTGGGAGGCAGAGGCAGACGTATTTCTGAGTTCGAA
TCCCGCCTGTTCCACATTCAGAGTTCCAATACAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_d14.g1 MSMg01no418_d14.g1 CHROMAT_FILE:
MSMg01no418_d14.g1 PHD_FILE: MSMg01no418_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:22 2005
         (454 letters)



>mm_chr2_4813051_4813904
          Length = 854

 Score =  832 bits (430), Expect = 0.0
 Identities = 448/454 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatttaggttatttctatttattttcttttacgtgcatgaatatttgccagcatgcacg 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 201 ctatttaggttatttctatttattttcttttatgtgcatgaatatttgccagcatgcaca 260

                                                                       
Query: 61  tgagtccactgcatgtgtgcctggaactgcagctagagatagttgtgaactgtcatgtgg 120
           |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 261 tgagtccactgcatgtgtgcctggaactgcagctagagatagttgtgagctgccatgtgg 320

                                                                       
Query: 121 gtgctgagcgccaaatttttatgcataatctcaaccattgagccatctctgtgacccagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgctgagcgccaaatttttatgcataatctcaaccattgagccatctctgtgacccagt 380

                                                                       
Query: 181 tatttagtttatgttagcagggtgtgtttatttcttttctctttctgtatgcgctcccta 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacttagtttatgttagcagggtgtgtttatttcttttctctttctgtatgcgctcccta 440

                                                                       
Query: 241 gtcagtttgtcatgatttactgatagaaagcccagttgtctgtggtcttttttcctagca 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcagtttgtcgtgatttactgatagaaagcccagttgtctgtggtcttttttcctagca 500

                                                                       
Query: 301 gtttgcactttaaacagtagttctcacaggaagggcttctctgaggatgggttacatcga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttgcactttaaacagtagttctcacaggaagggcttctctgaggatgggttacatcga 560

                                                                       
Query: 361 atctctcagcgagtcttcccacttcttggcaaacaaaattctttttgaaaacagggctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctctcagcgagtcttcccacttcttggcaaacaaaattctttttgaaaacagggctgt 620

                                             
Query: 421 gtttgtatggttagcttgtctggtgtccttcagg 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 621 gtttgtatggttagcttgtctggtgtccttcagg 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)