Query= MSMg01no418_f08.b1 MSMg01no418_f08.b1 CHROMAT_FILE:
MSMg01no418_f08.b1 PHD_FILE: MSMg01no418_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:30 2005
(649 letters)
>mm_chr2_161057679_161058727
Length = 1049
Score = 1071 bits (554), Expect = 0.0
Identities = 622/668 (93%), Gaps = 38/668 (5%)
Strand = Plus / Minus
Query: 5 gaattccatatgtaactaatataccactctttgtcttcccctcctattctacctcacctc 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaattccatatgcaaataatataccactctttgtcttcccctcctattctacctcacctc 742
Query: 65 tcccaaacactgtcacccaaattcatgacctcttctttaattattatttggatcagaagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcccaaacactgtcacccaaattcatgacctcttctttaattattatttggatcagaagg 682
Query: 125 ccaaaagattattgattttgaaaaaataggagggcatgaagttgggagaaagatagagta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaaaagattattgattttgaaaaaataggagggcatgaagttgggagaaagatagagta 622
Query: 185 ggggttctagggagagttggagggagcgagtgattggtgaatatgatcactgt----gta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 ggggttctagggagagttggagggagcgagtgattggtgaatatgatcactgtgtaagta 562
Query: 241 t-------------------aatacaaaatattatataacataaataaatacaaacaaat 281
| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatgaagtttttaaagaagaaatacaaaatattatataacataaataaatacaaacaaat 502
Query: 282 gaataaatcaatacatggaggatttgtaacttgccttgatggagaagttcaagccaattc 341
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaatcaatcaatacatggaggatttgtaacttgccttgatggagaagttcaagccaatt- 443
Query: 342 attcattttccatgctagctttatctggataacactgacttccgtaacaaagaaacccag 401
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 --------------ctagctttatctggataacactgacttccgtaacaaagaaacccag 397
Query: 402 cattccagcatcttgacacaaccaaaatgtacttctcacacagttaaaagtccactgtaa 461
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 396 cattccagcatcttgacacaaccaaactgtacttctcacacagttaaaagtccactgtaa 337
Query: 462 acatttatggctggctttccactatatgttgatgaaataaggatccacaatccttctgtc 521
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 336 acatttatggctggctttccactatatgttgatggaataaggatccacaatccttctgtc 277
Query: 522 ctgtggctctaccattgctaagaatcttcagggtcctttatgtccagtcaggcaaggcaa 581
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ctgtggctcgaccattgccaagaatcttcagggtcctttatgtccagtcaggcaaggcaa 217
Query: 582 aaagtacataggaaactcagaagggggacatcctggccactcacccactgagaacatctc 641
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 216 aaagtacataggaaactcagaagggtgacatcctggccactcacccactgagaacatctc 157
Query: 642 atgatccc 649
||||||||
Sbjct: 156 atgatccc 149
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_f08.g1 MSMg01no418_f08.g1 CHROMAT_FILE:
MSMg01no418_f08.g1 PHD_FILE: MSMg01no418_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:30 2005
(525 letters)
>mm_chr2_160861469_160862393
Length = 925
Score = 1000 bits (517), Expect = 0.0
Identities = 523/525 (99%)
Strand = Plus / Plus
Query: 1 aattccaacacatatacattcatatatatatttaagcagttgaaggatcagcaccagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattccaacacatatacattcatatatatatttaagcagttgaaggatcagcaccagaag 260
Query: 61 aatcgatggcttgttataacaagacattttaggcataaccaacactcaggtaacaaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcgatggcttgttataacaagacattttaggcataaccaacactcaggtaacaaaata 320
Query: 121 gaaggactctggctatgccttctctcaagtctctgtttcaccagaataaaatcattataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaggactctggctatgccttctctcaagtctctgtttcaccagaataaaatcattataa 380
Query: 181 gcctctcatttatctgaatttttagttttgctatccatgtaagaaattccaattgacaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctctcatttatctgaatttttagttttgctatccatgtaagaaattccaattgacaaa 440
Query: 241 ctttaattatatcactgagaaccaagccaaatattgtggcacacacctaaaactccaggc 300
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttaatcaaatcactgagaaccaagccaaatattgtggcacacacctaaaactccaggc 500
Query: 301 ttctggggagggtgaggcagaatttatacattctaggcctgtgctacacagactctctca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctggggagggtgaggcagaatttatacattctaggcctgtgctacacagactctctca 560
Query: 361 aataataaacaggggttttctttcttcttttcttgccattttaataaaaagaaaaattta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aataataaacaggggttttctttcttcttttcttgccattttaataaaaagaaaaattta 620
Query: 421 aatgtgcatttctaaaatactcactagagaaggaaacggaatatcaggatcttttctccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgtgcatttctaaaatactcactagagaaggaaacggaatatcaggatcttttctccc 680
Query: 481 tcaactgagtttgtatataagcaagatcatgtatgtataaacatt 525
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaactgagtttgtatataagcaagatcatgtatgtataaacatt 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
