Query= MSMg01no419_e13.b1 MSMg01no419_e13.b1 CHROMAT_FILE:
MSMg01no419_e13.b1 PHD_FILE: MSMg01no419_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:45 2005
(319 letters)
>mm_chr2_58167237_58167956
Length = 720
Score = 588 bits (304), Expect = e-172
Identities = 316/320 (98%), Gaps = 1/320 (0%)
Strand = Plus / Minus
Query: 1 taccacttaggcttcatccaactgcacttctagagcatgcaggctttattatgtt-aaaa 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 520 taccacttaggcttcatccaactgcacttctagagcatgcaggctttattatgttaaaaa 461
Query: 60 atcacccctcacgaacactgcaatgtgaaaaaaatgaaagactagttcctgactgagaag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 atcacccctcacgaacactgcaatgtgaaaaaaatgaaagactagttcctgactgagaag 401
Query: 120 cctaacaaggtatattctatccttctaagaccctttgattgaccaagtgcatggcaacat 179
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 400 cctaacaaggtatattctatccacccaagaccctttgattgaccaagtgcatggcaacat 341
Query: 180 cttgtcctggaagagatgttgttagggtcctgtcctgtcctcatgcttactgaccaacct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cttgtcctggaagagatgttgttagggtcctgtcctgtcctcatgcttactgaccaacct 281
Query: 240 tggccttaggataggctactgctatagccaatggacttccctcttcagaccctgtacctt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tggccttaggataggctactgctatagccaatggacttccctcttcagaccctgtacctt 221
Query: 300 ttggatcttgtcactgataa 319
||||||||||||||||||||
Sbjct: 220 ttggatcttgtcactgataa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space: 220410
Effective search space used: 220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_e13.g1 MSMg01no419_e13.g1 CHROMAT_FILE:
MSMg01no419_e13.g1 PHD_FILE: MSMg01no419_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:45 2005
(454 letters)
>mm_chr2_58016920_58017771
Length = 852
Score = 764 bits (395), Expect = 0.0
Identities = 439/459 (95%), Gaps = 12/459 (2%)
Strand = Plus / Plus
Query: 1 cagtagtctagaaaggtggccaccactcttactcactgagccaaatcttgaacgccatta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 cagtagtctagaaaggtggccaccactcttactcactgagccaaatcttgaatgccatta 260
Query: 61 tcagctggttctagtgactggtttgggcgtttccattttccctgaatcaatgggaattag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagctggttctagtgactggtttgggcgtttccattttccctgaatcaatgggaattag 320
Query: 121 ataccattctccaaaagag--tgttcatcttcagaaaaaggtaacctaaaattatagaga 178
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataccattctccaaaagagagtgttcatcttcagaaaaaggtaacctaaaattatagaga 380
Query: 179 aaggctttctctagagagtagacagttcaaggaagagaaataacagaggtggctcattaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggctttctctagagagtagacagttcaaggaagagaaataacagaggtggctcattaa 440
Query: 239 agctccttg---ctttctgcactatggagaagcaccaagcatatgaccagagttattaat 295
||||||||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 agctccttgaaacta----cactatg---aagcaccaagcatatgaccagagttattaat 493
Query: 296 acctattaaagcaacaaagaggaaaaactttaaccctaaaataaataataatgaaccata 355
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 494 acctattaaagcaacaaagaggaaaaactttagccctaaagtaaataataatgaaccata 553
Query: 356 ttttcaatatatgaataagaaaacaattttctaacctattcatgttcagttcacttgctc 415
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 554 ttttcaatatataaataagaaaacaattttctaacatattcatgttcagttcacttgctc 613
Query: 416 acgaagctatgggtaaatcataaaatcaccctagagaac 454
|| ||||||||||| ||||||||||||||||||||||||
Sbjct: 614 acaaagctatgggtgaatcataaaatcaccctagagaac 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 852
Length adjustment: 10
Effective length of query: 444
Effective length of database: 842
Effective search space: 373848
Effective search space used: 373848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
