BAC Information

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BAC

Clone NameMSMg01-420N04
Chromosome2 (Build37)
Map Location 91,355,555 - 91,355,937
singlet/doubletsinglet
Overlap genenone
Upstream genePtprj, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4
Downstream geneLOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420N04.T7 (MSMg01no420_n04.b1)MSMg01-420N04.TJ (MSMg01no420_n04.g1)
ACCAG515596AG515597
length695755
length of high quality
(start - end)		---492 (69 - 560)
definitionCHROMAT_FILE: MSMg01no420_n04.b1 PHD_FILE: MSMg01no420_n04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:47 2005CHROMAT_FILE: MSMg01no420_n04.g1 PHD_FILE: MSMg01no420_n04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCATAATTGGGCGCGAANGAGACATATTCCAACGGGGGCGGGAANAGT
TATAACTCAGCGGGGGGGGNGTTCNCCGAAAAGACACAACTCAATGGAGT
CCTCCATAGCAGGAAGAAAAATGCCGATAGGCGTCATTATAGGTGTGCCT
GGAGGCTATACCCCAACCCCATAGAGAGGGGCTAAACGGACTTCTGAGGA
GTACTCTGCTGTAGCTTTGGGGGGTTGTGTTGTTTTGTTGTGTGTTTTTG
GTGCGCGTGTGTGTGTGTCTCTGTGTGCGTGTGCGTGTGCGCGTGTGTTT
TTTGTTAGCGACCACACGGGCACTCCCGCCGACAAAATTTTGTGGCCTCT
ATTTTCTCGGGCGACTAATCCCCGTGAGGATATACACCGTCGCCAGTGCT
CCCAGTGTGTTATCAGAGAGACACAGGGGTTGAGAACTCACACCACGCGC
TATGTGGTCTAGTAGACACAGAGCGGCTTTAAGTGATACGCGTGTCCCTG
TGAGACGGAGATTCTTTGTGTCCCCAACTGAGACCTCATCCACGAGACCC
TTGTGTCACATCCCCCCGCGCGGTGGAAATATGGGCGTGTGCCCACGCGC
TGTTTCCCCTAGGGAGAGCTTTTTATTTGTGTTATTGTGCATGCGAGTTG
CTTCAAACCAGTGCGTCTCTAATAGAGCACAACCGTGAGACGCGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTATGGTGCTGTGTGTTTGTGTATATACCCAGA
GGCCAAAAGACCACCTTGGGTGTCATCCCTCAGGAGCCATCCAGACAACA
CATCCTCACATACACACTGAAACAGAGGTTCTTACTAGCCTGGAGCCTAC
CAGCTAGGCTAAGCTGCTGGCCAATATGCCCCAGGGGTCACCTGTCAGTA
TCTGTCCAGTGCTGGGATTTCAAGTGCATGTCATCAGTCCTCCCCTTCTC
CCTCCCCCACCCTCTCCCTCTGACAGAGTCTCATTATGTAGCACTGGCTA
ACCTTGTTCACTAGAGCAGGCTGGTCTACCATGACTGCCACCGTGCCCGC
CGTAGATGCCACACAGAATTTCATTTTCGGGGAGAGGTTCCATGGGCTCT
GGGAATCAAATGTAGGCCCTTGCATTTGCAAAGCAAGGCATTTACTGACT
GAACTATAGTCAGTATATGCCTAGTCCCAGCTTGTTAGACTCTGACTCAT
GCTCTTCAGTATGGGGCTCAGGCTTTACATCCGGGGAACCGGAAGAGGAA
TCCTCTACCCTCTCTCAGACTCCAGATTTTTCCTTTGTAGATGAGAATTT
GGGTCTTTTTCTTTTTTTAAAAAACGCGGCGTTGTATTGCTCCCTTCTTC
CTTTTTCACCCCCCTTTTTTCTTTCTTTTTTTTTATTCCTTCCTCTCTCT
ATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_n04.g1 MSMg01no420_n04.g1 CHROMAT_FILE:
MSMg01no420_n04.g1 PHD_FILE: MSMg01no420_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:47 2005
         (492 letters)



>mm_chr2_91355046_91355937
          Length = 892

 Score =  710 bits (367), Expect = 0.0
 Identities = 379/383 (98%), Gaps = 1/383 (0%)
 Strand = Plus / Minus

                                                                       
Query: 111 ttcttactagcctggagcctaccagctaggctaagctgctggccaatatgccccaggggt 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 ttcttactagcctggagcctaccagctaggctaagctgctggccaatatgccccaggggt 833

                                                                       
Query: 171 cacctgtcagtatctgtccagtgctgggatttcaagtgcatgtcatcagtcctccccttc 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 cacctgtcagtatctgtccagtgctgggatttcaagtgcatgtcatcagtcctccccttc 773

                                                                       
Query: 231 tccctccccc-accctctccctctgacagagtctcattatgtagcactggctaaccttgt 289
           ||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 772 tccctccccctcccctctccctctgacagagtctcattatgtagccctggctaaccttgt 713

                                                                       
Query: 290 tcactagagcaggctggtctaccatgactgccaccgtgcccgccgtagatgccacacaga 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tcactagagcaggctggtctaccatgactgccaccgtgcccgccgtagatgccacacaga 653

                                                                       
Query: 350 atttcattttcggggagaggttccatgggctctgggaatcaaatgtaggcccttgcattt 409
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 attttattttcggggagaggttccatgggctctgggaatcaaatgtaggcccttgcattt 593

                                                                       
Query: 410 gcaaagcaaggcatttactgactgaactatagtcagtatatgcctagtcccagcttgtta 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gcaaagcaaggcatttactgactgaactatagtcagtatatgcctagtcccagcttgtta 533

                                  
Query: 470 gactctgactcatgctcttcagt 492
           |||||||||||||||||||||||
Sbjct: 532 gactctgactcatgctcttcagt 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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