BAC Information

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BAC

Clone NameMSMg01-421A04
Chromosome2 (Build37)
Map Location 87,332,474 - 87,332,681
singlet/doubletsinglet
Overlap genePramel7
Upstream geneOlfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126
Downstream genePramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421A04.T7 (MSMg01no421_a04.b1)MSMg01-421A04.TJ (MSMg01no421_a04.g1)
ACCAG515740AG515741
length771785
length of high quality
(start - end)		210 (46 - 255)255 (73 - 327)
definitionCHROMAT_FILE: MSMg01no421_a04.b1 PHD_FILE: MSMg01no421_a04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:01 2005CHROMAT_FILE: MSMg01no421_a04.g1 PHD_FILE: MSMg01no421_a04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:01 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAA
TTCCCTTATTAGGCTCCCCGCATCAGAGACGGTCAATACTTCATTCCTCA
CCAGGCTCCTGAAAGCCTGATCCTGGAGTGTGGGTGGGGCACTGACCATT
CTGACAGATCTTTAGGGAGATGATCCTGGGGGAAAAATTAGGAGACAATG
TATTTTCAGGGTCTCTCTTATGAGGCTATTAACCCCTCATAGTAGGCATC
TGTCACCATGGTAGCCATGTCGGAGACTTGAATTGTTCCCTATTTCACTC
ACTATTTGCTCGTCGCAAAATCATTCTTTTTTACATGCAGGATGTGTAGC
CTCTCGCAGCCATTCCTGTTTACCATTGTCCCATCCAGTTCCAACTGTTG
CTATTCTGAATCCCAGGTTCCTTTGGAAGGGAGAATCCAGGAGGAAGTAT
TCTTAGCCCATTCCTTATAAAGCAAAAACGGTATTATCCGCCTTTCAGAG
ACCATGAAAAAGCTTTATACCAAGCTAACCGATATTCTGCTTTCAACAAA
TTGATCCTGCCCGCCCCGGACCGAGAATAATCCATGACATGTCTTGATTA
CTCTTCATCTGTTTAATTTTCCTTCGCTCTCTCTCACTTCTCCTCTCCTC
TCTTTACCATATGCTTTTATTTGTCTTGTACAACCTCGGGTTATAAGTCC
CGTGTTGCCCCTGTTAAGGTCCTTTGACCCCCCATCCCTGTTTCCTGTAT
TTCTNTTAAATCTTACTGCCN

GATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTATGTGCCTGGGTCCTGCAGGTCCCAG
TTACTCCCCGTGTTGGGGACAGATATTGTGTTCTCCTCCCCTCTCATCCT
CTGATCCTGGTTGGAGCACCTGGGAGTGGAGCTCCCTCTGGGTGTTGTGG
GGATGGCTGCAGAGTTTGCATCCAAGGTCTGCTCAGAACACAGGCCCAGA
CAGACCGGCCTCACCTCATCTATAATATGACTTTATAGAAGCCAGGGTGT
CTCATATCATTAAGAAACATACACACAGGCTGGGGGTGGTGGTGCACTCC
TTTAATCCCAGAACTTGGGAGGGAGAGGCAGTCGAATTTCTGAGTTTGAG
GCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACAAAGAG
AAACCTTGTTCTTGAAAAAGACAAAACAAAACAGCTACAACGACTAAACA
AAACATATACTTTAGGCCAATACCTACTGATACTTATTTTAGAAACTCAC
ACTCTCTAAAGCAAAAAGAGTAGTCTGAGACAGCATGCCATGTTAATGCA
CATTATGTTGTGCGTGGAGTTAACTTTTATTTGCGTCTTTTTTTACCCCC
AATTTTTCTCTTTATTAATAACCTTTAACTCTACGACTTTTAATTCCATC
TCCTTTGTAATCGCCTAACTTTTATATCCTTTTTACCATTCAGTAATATT
ACATACATTCTTTGTGTCTCTCAACGTCATATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_a04.b1 MSMg01no421_a04.b1 CHROMAT_FILE:
MSMg01no421_a04.b1 PHD_FILE: MSMg01no421_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:01 2005
         (210 letters)



>mm_chr2_87332272_87332881
          Length = 610

 Score =  387 bits (200), Expect = e-112
 Identities = 206/208 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcccttattaggctccccgcatcagagacggtcaatacttcattcctcaccaggct 62
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcccttattaggcactccgcatcagagacggtcaatacttcattcctcaccaggct 262

                                                                       
Query: 63  cctgaaagcctgatcctggagtgtgggtggggcactgaccattctgacagatctttaggg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cctgaaagcctgatcctggagtgtgggtggggcactgaccattctgacagatctttaggg 322

                                                                       
Query: 123 agatgatcctgggggaaaaattaggagacaatgtattttcagggtctctcttatgaggct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agatgatcctgggggaaaaattaggagacaatgtattttcagggtctctcttatgaggct 382

                                       
Query: 183 attaacccctcatagtaggcatctgtca 210
           ||||||||||||||||||||||||||||
Sbjct: 383 attaacccctcatagtaggcatctgtca 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 610
Length adjustment: 9
Effective length of query: 201
Effective length of database: 601
Effective search space:   120801
Effective search space used:   120801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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