BAC Information

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BAC

Clone NameMSMg01-421E03
Chromosome2 (Build37)
Map Location 146,110,816 - 146,111,315
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1
Downstream geneA230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421E03.T7 (MSMg01no421_e03.b1)MSMg01-421E03.TJ (MSMg01no421_e03.g1)
ACCAG515927AG515928
length786775
length of high quality
(start - end)
161 (81 - 241)533 (72 - 604)
definitionCHROMAT_FILE: MSMg01no421_e03.b1 PHD_FILE: MSMg01no421_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:22 2005CHROMAT_FILE: MSMg01no421_e03.g1 PHD_FILE: MSMg01no421_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAAT
TCCTCAACCATTAGCAAGAATACGTATGGNCCTAACCTTTTTCCTTCTAG
CATGTAGATGAATGATTACTAAACATGTTGATAAGACAGTTCCTGCCCTG
GCAATCTATAGTGTAGCCTTTTTCCAGCTCCTTTACAAGGCCCAAATTAC
CCTGATATCTAAACTGCACAAAGACCCAACAAAAAGAAAAAGAAAAGTAC
AAACTTTTATTCCTTATGAACATAGATGCAAAGATTTCTTTGTAAAATAT
TTGCAAACTAAATCCAAGAAGACTTCTGTTTTATCATCATGACCGAGTAG
GCTTCATCCCACGATATGCATGGATGCGTCAACATGTATAAATTGATAAA
CATAATCTACCTCATAAATAGTCTGAAAGACAAAAACCACATGGTCATCT
CATTAGATGCAGAAAAGGCCTCTGACGATATCCAACGCCCCTTCGTGATA
AAAGTCTTGGCGAGATCAGGGATACTAGGCACATACATAAATATAATGCA
TGCAATTTACTGGAAGCTCACAGGCAATGCAAATTATATCGGAGAGAAAC
CAAGTTGTCTGCCTCTCTCCATACCTATCCTATAAAGTGTTTGGAAATCT
TAAAAGCCTACAGACCACTGCTTTTTTTATTTTCATACTTACTAGTGACC
GAGACTATTTCGCCTTTATTTTGCTGATGGAACTTTTTTTTTTCTCTTAC
ATGTATCCTTCTTTCTTCCATCCTTTGTATCTTCCN
TGAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTAAGTCTGCCTTTGGCCCAGACAGCTGC
CAACTCTGGTGCTGGGCAGTGGGTAGCCTGCCTTATTTACCAGTTCACAA
GAAGAAAGAGAGAGAGAGAGAAGAAAGAAGAAAAAAAGAAAAGAAAAGAC
ATAAACCATATTGGTTTTATTGTAATAAAAATTATAACTGGAGAAAATTA
TCCATATTTTAAATGTAACTTTTATTAAAATATTAAAATTTAAAATGTAA
ATTTGAATGAAGCTCTTTGCTCCTGAGAAGGTATTGCATGTCCCCACTCC
ATCATGGATCCTGGCCCATGTGGAAGTGGCACTGGCTAGTTCAGCCCAAT
AATTCACTTTATTATCAAAATAGAATCTACAGGGATTATTCACATTAGTC
TGAGCATCATCCCTGCAGCAGCTCAGGTTAGATGGTTCTCCCTGGGGTGG
AGCCAAGAAATGCCAAGCCATCTCTTTGGGGGGGGGGTGTCAGACCACAG
GCTTTCCACAGTGCTCCTGGAACACAGGGCACGGTCTTCTCTCATGGCAT
TAGGTTCTACGGCGTTCTTCCCAACCTCTTGTGTTTTTATTTCAACCGTG
TGCGTGTGCTCCGGTGTGTGTGTGTGAGTCCGTTGGTGTTTGAGTTCTTT
TTCTTCATGCTCTACTTTTTCATTTTTTTCTTTTCGTTCTTACTCGATCT
GTAATTTTAATTTATTAAGTTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_e03.g1 MSMg01no421_e03.g1 CHROMAT_FILE:
MSMg01no421_e03.g1 PHD_FILE: MSMg01no421_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:22 2005
         (533 letters)



>mm_chr2_146110383_146111315
          Length = 933

 Score =  959 bits (496), Expect = 0.0
 Identities = 499/500 (99%)
 Strand = Plus / Minus

                                                                       
Query: 34  tctggtgctgggcagtgggtagcctgccttatttaccagttcacaagaagaaagagagag 93
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 tctggtgctgggcagtgggtagcctgccttatttaccagttcacaagaagaaagagagag 874

                                                                       
Query: 94  agagagaagaaagaagaaaaaaagaaaagaaaagacataaaccatattggttttattgta 153
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 agagagaagaaagaagaaaaaaagaaaagaaaagacataaaccatattggttttattgta 814

                                                                       
Query: 154 ataaaaattataactggagaaaattatccatattttaaatgtaacttttattaaaatatt 213
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 ataaaaattataactggagaaaattatccatattttaaatgtaacttttattaaaatatt 754

                                                                       
Query: 214 aaaatttaaaatgtaaatttgaatgaagctctttgctcctgagaaggtattgcatgtccc 273
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 aaaatttaaaatgtaaatttgaatgaagctctttgctcctgagaaggtattgcatgtccc 694

                                                                       
Query: 274 cactccatcatggatcctggcccatgtggaagtggcactggctagttcagcccaataatt 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cactccatcatggatcctggcccatgtggaagtggcactggctagttcagcccaataatt 634

                                                                       
Query: 334 cactttattatcaaaatagaatctacagggattattcacattagtctgagcatcatccct 393
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cactttattatcaaaatagaatctacagggattattcacattagtctgagcatcatccct 574

                                                                       
Query: 394 gcagcagctcaggttagatggttctccctggggtggagccaagaaatgccaagccatctc 453
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gcagcagctcaggttagatggttctccctggggtggagccaagaaatgccaagccatctc 514

                                                                       
Query: 454 tttggggggggggtgtcagaccacaggctttccacagtgctcctggaacacagggcacgg 513
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 513 tttggggggggggtgtcagaccacaggctttccacagtgctcctggaacacagggcacag 454

                               
Query: 514 tcttctctcatggcattagg 533
           ||||||||||||||||||||
Sbjct: 453 tcttctctcatggcattagg 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)