Query= MSMg01no421_i17.b1 MSMg01no421_i17.b1 CHROMAT_FILE:
MSMg01no421_i17.b1 PHD_FILE: MSMg01no421_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:45 2005
(540 letters)
>mm_chr2_19398487_19399426
Length = 940
Score = 801 bits (414), Expect = 0.0
Identities = 432/438 (98%)
Strand = Plus / Minus
Query: 1 aataatgctgtgtaagctggcagtaagagctcccccttggctgtgtcatttcatgacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aataatgctgtgtaagctggcagtaagagctcccccttggctgtgtcatttcatgacaaa 379
Query: 61 caacaatggcaggagagtctatcagaacaagtgttcacatcccgagccaggaagcagaga 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 378 caacaatggcaggagagtctatcagaacaagtgttcacatccggagccaggaagcagaga 319
Query: 121 gaacaagagaatccaggcttgctccatgcaaccaccatctagtgaaactagatgaatctt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 318 gaacaagagaatccaggcttgctccatgcaaccaccatctagtgaaactagatgaagctt 259
Query: 181 ccagcggctatttgggatttgaagtaaccttgtgacttctggcatgtttctgtttgatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ccagcggctatttgggatttgaagtaaccttgtgacttctggcatgtttctgtttgatgc 199
Query: 241 ccttctttatctgaaggacgtttgttccagaaccacacaggtaccaagatccttagatgc 300
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ccttccatatctgaaggacatttgttccagaaccacacaggtaccaagatccttagatgc 139
Query: 301 ttaagacctacatttatatatatatacatatagtgtttgtatgagatgttttacaatcct 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 ttaagacctacacttatatatatatacatatagtgtttgtatgagatgttttacaatcct 79
Query: 361 cccatagactttaagtctctctctagattacttgaaccacctaatgcaatatactattca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 cccatagactttaagtctctctctagattacttgaaccacctaatgcaatatactattca 19
Query: 421 ttgaataatttacatagt 438
||||||||||||||||||
Sbjct: 18 ttgaataatttacatagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_i17.g1 MSMg01no421_i17.g1 CHROMAT_FILE:
MSMg01no421_i17.g1 PHD_FILE: MSMg01no421_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:45 2005
(514 letters)
>mm_chr2_19220792_19221705
Length = 914
Score = 973 bits (503), Expect = 0.0
Identities = 512/515 (99%), Gaps = 1/515 (0%)
Strand = Plus / Plus
Query: 1 agcagctagtgcctagtgctagccaatggaagtgtatgaagagcaagcttttccacctcc 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 agcagctagtgcctagtgttagccaatggaagtgtatgaagagcaagcttttccacctcc 259
Query: 61 catgctagggataattggtgtaaacgtgaataactactcacgcagatgtaagcagagtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 catgctagggataattggtgtaaacgtgaataactactcacgcagatgtaagcagagtgc 319
Query: 121 ccagagcaattgaagtctttaattagccgggcagtggtggtgcacacctttaatcccagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccagagcaattgaagtctttaattagccgggcagtggtggtgcacacctttaatcccagc 379
Query: 181 atttaggaggcagaggcaggggcaggggcaggcagatttctgagttcatggcttgcttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atttaggaggcagaggcaggggcaggggcaggcagatttctgagttcatggcttgcttgg 439
Query: 241 agtgaatagtgtgttccaggatggcctgggctacacagaggaaaatttaaaaaaaa-taa 299
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 440 agtgaatagtgagttccaggatggcctgggctacacagaggaaaatttaaaaaaaaataa 499
Query: 300 aagaaaaaagaaaaaagaaaaagaaaacgatacaagcaacaaagttttaaattaacatgc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagaaaaaagaaaaaagaaaaagaaaacgatacaagcaacaaagttttaaattaacatgc 559
Query: 360 cacaaaatgtctttctgtttaaaatgctacagaattttaaagagggaatttgtgcagcca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cacaaaatgtctttctgtttaaaatgctacagaattttaaagagggaatttgtgcagcca 619
Query: 420 ttgacaccacagtcagaatagaaaaaagctcagccaacccagagtcctgccctgatactg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttgacaccacagtcagaatagaaaaaagctcagccaacccagagtcctgccctgatactg 679
Query: 480 caactcattcttttctctggaaaaaagaacgagac 514
|||||||||||||||||||||||||||||||||||
Sbjct: 680 caactcattcttttctctggaaaaaagaacgagac 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
