BAC Information

Click to search

BAC

Clone NameMSMg01-422F10
Chromosome2 (Build37)
Map Location 55,752,496 - 55,752,846
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt13, LOC666936, Kcnj3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422F10.T7 (MSMg01no422_f10.b1)MSMg01-422F10.TJ (MSMg01no422_f10.g1)
ACCAG516751AG516752
length739745
length of high quality
(start - end)		517 (37 - 553)454 (67 - 520)
definitionCHROMAT_FILE: MSMg01no422_f10.b1 PHD_FILE: MSMg01no422_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:46 2005CHROMAT_FILE: MSMg01no422_f10.g1 PHD_FILE: MSMg01no422_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCAG
GTATTCTCTGGATGGTATTTACTTCATTCTTTGTTCCACAATGTGTCCCT
ATATTTCCTTTAGACAGGAGCAATCCTAGGTTCAAATTTCTGAGATGGGT
GGGTAGCCCCATCAGTCATTTGAAGGCCATATCTAACTTCTCTGTATAAT
CTCTACATGCTCTCTCTCCTCTTTGTTGGGTATTTCAGTGAATGTCATCC
ACATTTGGGCACTGGGGGCCTCTTACTTTCCTTGAATCTGGGACTTTCTG
GTGGCTACCCTAAGATCCCCATCCCCAATTGCTATGCACTTCTCTTCAAT
TTCCTGACCTTCTGACATTCTCCCCATCTCCTCCTACACTTGATCCTGGC
CCCTTCTTTTCCTGCCCCCCTCTTCTCTTCCTCCCAAGTCCCCCTCACTC
TCTACCTCCTTTGTTATTTTATTCCCCATTCTAAGTAGGACTGAAGCCTC
CACACTTTGGTTTTCCTTCTTCTTGAGCTTCATATGGTTTGTGAATTATA
TTGTGGGTATTCTGAGGATTTTTCTTCATATCCACTTATCAGTGAGTGCA
TACCATGTGTGTTCTTGTGTGACTGGGTTACTTAATCCAGGCGGGGATTT
TCCAGGTCCCCCCCATTGGGCCCACATTTCTTGAAAACTTGGTTTTAAAA
GTTGAGAAGACCCCCTTTTTTGAAGGTATCCACTTTCTN

NGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGAACTTTAAAAAATATTAGCCACTCATATTTCA
TCTGTGAAAACTTTATGCTTAGCTCCATATCCCATTCTAAAAACTGGATT
GTTTTCTTAATGTTTAGTTTCTTAATTCCTTGTATATTCTAAATAATTCT
AGATACTAGCCCTCTATTAGATGTACAACTGAAAAATAATTTCCCTATTC
CATAGACTGCCTTTTTACTCAAATGATGATATACTTTGCTGTACAAAAAT
TTTTTTTTTGTTTTTGTTTTTTTTTTTTAATTTCATGAGTTACCAGTTCT
TAATTGTTTATCTTAATGCCATGGCTTCCAGGTCATTTGAAAAGGCATTG
CTTTAAAGATCTGTGAAATATTAATTTTCACAGGGAAAATGATCAGCATG
ATTGAACATTTGAAGAATATGCTCAAACGTTCAATGATATACCAACTCAT
GTGACTGCCATCAAATCTCAGAAAGTGGGAAGAATGTGCAAAAGCAGTGC
AGATCAGTATCCATGGGGAGGTAAAATAAAGCTCTATAGACTTGCCCTGG
AATTCCCCAAGTGAATTTAAAAATGAAAAATTACCTTCTGGTTTCTATCT
GGACTCTGAAAGAAAACCCTTTGTCATTGTCTTTTTGACCCAAATTTTTA
TCTGGGAAAGAACTTGTCCCCCCCACAAAAATTTGTCTTTCCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_f10.g1 MSMg01no422_f10.g1 CHROMAT_FILE:
MSMg01no422_f10.g1 PHD_FILE: MSMg01no422_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:46 2005
         (454 letters)



>mm_chr2_55751992_55752846
          Length = 855

 Score =  605 bits (313), Expect = e-177
 Identities = 342/355 (96%), Gaps = 10/355 (2%)
 Strand = Plus / Minus

                                                                       
Query: 106 ttaattccttgtatattctaaataattctagatactagccctctattagatgtacaactg 165
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ttaataccttgtatattctaaataattctagatactagccctctattagatgtacaactg 796

                                                                       
Query: 166 aaaaataatttccctattccatagactgcctttttactcaaatgat----gatatacttt 221
           ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||
Sbjct: 795 aaaaataatttccctattccatagactgcctttttactcaaatgatgatagatatacttt 736

                                                                       
Query: 222 gctgtacaaaaattttttttttg-tttttgttttttttttttaatttcatgagttaccag 280
           |||||||||||   ||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 735 gctgtacaaaa---ttttttttgttttttg-tttttttttttaatttcatgagttaccag 680

                                                                       
Query: 281 ttcttaattgtttatcttaatgccatggcttccaggtcatttgaaaaggcattgctttaa 340
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tttttaattgtttatcttaatgccatggcttccaggtcatttgaaaaggcattgctttaa 620

                                                                       
Query: 341 agatctgtgaaatattaattttcacagggaaa-atgatcagcatgattgaacatttgaag 399
           | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 619 atatctgtgaaatattaattttcacagggaaagatgatcagcatgattgaacatttgaag 560

                                                                  
Query: 400 aatatgctcaaacgttcaatgatataccaactcatgtgactgccatcaaatctca 454
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aatatgctcaaacgttcaatgatataccaactcatgtgactgccatcaaatctca 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 855
Length adjustment: 10
Effective length of query: 444
Effective length of database: 845
Effective search space:   375180
Effective search space used:   375180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |