Query= MSMg01no422_l04.b1 MSMg01no422_l04.b1 CHROMAT_FILE:
MSMg01no422_l04.b1 PHD_FILE: MSMg01no422_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:12 2005
(490 letters)
>mm_chr2_41052989_41053878
Length = 890
Score = 886 bits (458), Expect = 0.0
Identities = 479/486 (98%), Gaps = 2/486 (0%)
Strand = Plus / Plus
Query: 6 gaattctgggactgatgcctccaaatctgaccatacattcaattcttcaaccttagattt 65
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 206 gaattctgggactgatgcctccaaatctgaccatacgttcaattcttcaaccttagattt 265
Query: 66 ctagactgtgacaatatttggcttagcatcttttaaaaaggtaattaacttcaatggtgc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctagactgtgacaatatttggcttagcatcttttaaaaaggtaattaacttcaatggtgc 325
Query: 126 tataaacagtgaccttgtatcaatgactttatacacggatgtaatcagtacatcaaaaga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tataaacagtgaccttgtatcaatgactttatacacggatgtaatcagtacatcaaaaga 385
Query: 186 gaggaaacactagttttggctaagtgtcagag-attaccattgatagtttcagacatatg 244
|||||||||||||||||||||||||||||||| || || | |||||||||||||||||||
Sbjct: 386 gaggaaacactagttttggctaagtgtcagagcataac-actgatagtttcagacatatg 444
Query: 245 tgagatatcctgaaggtagaagtatatagcagaggactgtcgttcagtagccaagtctca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgagatatcctgaaggtagaagtatatagcagaggactgtcgttcagtagccaagtctca 504
Query: 305 tagcagtttggtttgggcatttagataatatttggactgtttaagataacaatgatgtag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagcagtttggtttgggcatttagataatatttggactgtttaagataacaatgatgtag 564
Query: 365 gtttcatcccaggatgaagggatgatccatcaatgtaatccagtatataaacaaactcaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtttcatcccaggatgaagggatgatccatcaatgtaatccagtatataaacaaactcaa 624
Query: 425 agacaaaaaccacatgatcacctcgtagatgtggagaaagcatttgacaaaatccaacac 484
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 625 agacaaaaaccacatgatcacctcgtagatgcggagaaagtatttgacaaaatccaacac 684
Query: 485 ccattc 490
||||||
Sbjct: 685 ccattc 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_l04.g1 MSMg01no422_l04.g1 CHROMAT_FILE:
MSMg01no422_l04.g1 PHD_FILE: MSMg01no422_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:12 2005
(339 letters)
>mm_chr2_41256259_41257000
Length = 742
Score = 586 bits (303), Expect = e-172
Identities = 328/337 (97%), Gaps = 3/337 (0%)
Strand = Plus / Minus
Query: 1 tcacctgcatcgtgtgagatcacctatcaaatagtcaaaggaagcaacagggtctaggct 60
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 537 tcacctgcatcgcgtgagatcacctatcaaatagtcaaatgaagcaacagggtctaggct 478
Query: 61 ttttcatgtaagaaccaaaacaccaaaatttactttagagagctcctttcagtta--ttt 118
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 477 ttctcatgtaagaaccaaaacaccaaaatttactttagagagctcctttcagttattttt 418
Query: 119 ttctttcatgcaacattcaaagagtgttttctaactatttcttagattttggtaaattgt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ttctttcatgcaacattcaaagagtgttttctaactatttcttagattttggtaaattgt 358
Query: 179 aagaaaagtttgctatcttaactgtcttcaaatgctgctcattcatactataggtttgtt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 357 aagaaaagtttgctatcttaactgtcttcaaatgctgctcattcatactatagatttgtt 298
Query: 239 -ctctcctttcacaaacttcacttcctctacattcttagagcaccttcttgtgcagagca 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tctctcctttcacaaacttcacttcctctacattcttagagcaccttcttgtgcagagca 238
Query: 298 gacaacagaacagtaaggtgttgttgtggttgttgtt 334
|||||||||||||||||||||||||| |||||||||
Sbjct: 237 cacaacagaacagtaaggtgttgttgttgttgttgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 742
Length adjustment: 9
Effective length of query: 330
Effective length of database: 733
Effective search space: 241890
Effective search space used: 241890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
