BAC Information

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BAC

Clone NameMSMg01-423B05
Chromosome2 (Build37)
Map Location 63,337,838 - 63,338,014
singlet/doubletsinglet
Overlap genenone
Upstream geneFap, Ifih1, Gca, Kcnh7
Downstream geneEG667257, Fign
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423B05.T7 (MSMg01no423_b05.b1)MSMg01-423B05.TJ (MSMg01no423_b05.g1)
ACCAG517316AG517317
length807742
length of high quality
(start - end)
180 (35 - 214)548 (62 - 609)
definitionCHROMAT_FILE: MSMg01no423_b05.b1 PHD_FILE: MSMg01no423_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:40 2005CHROMAT_FILE: MSMg01no423_b05.g1 PHD_FILE: MSMg01no423_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGTAT
GACAAAGAAAATTATTAAAAAAAACCACACACACAAAAACCCTCCAGTTC
TTCCCAAGTTCTCACAGCTTGAAGGGGACTCCAACAGAGAATCTCCAGTA
AAATGCAAATATCCAGAGCCTCACCAGGTCCATGTGAGTCTCTAATTGGC
AGCCTTCCTAGCAGAATTAATCTCATTCAATACTATATACTCTGAGTTAT
TTTTAGGTTCTTGAGTAATGGGTTATTTTTTTTTATNNNNNNNNNNAAAG
TGTATNNGNNNNAATATAGGNNNGGATATTATTCTTTGTGGAGNGAANNN
AANNAAAAAAAAATAAAAAAAANNNNTTTTTTTTGCCTTTTTNNNNNTTA
TAAAGAAGGTAAAAAAAACTTTCTTTCCTTCCCTCCTCCNNNNCCGCGCC
CCCACACCCCCCCCTCCCGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNN
NNNNNNNGAATGAGGCCTCGGCGGGTTTTGTTAAATAAGGGGGCGGGGCG
CCCCCCCCCCNTTCGAAAAAAAAAAACCCCCCCGAAAAACACACCNTTTT
TCTCCTCCCCCGCGGGAATANNCTTTTATTTTTTTTGTGGGGGGGTGTGG
TGNNNNNNCCCAACACCCCAACAANNCAACCNNNNNNNNACAACAAAACC
ACAANCACCCCCCCCCCCCCCCCNANAACCCCCTCCCCTATTNCNCNNCN
ACCTCCACCCCATATCACTNNTCCCCTTTTCTTCTCTTTTATTTGGGTGG
TGGTAAG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTGTTCAGTTCTGAGCCTCATTTTTTAATGGAGTTTTT
TGATTTTCTGGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTTAGAAAATTGGACATAGTACTAAAGGAGGATCCAGAA
ATACCTCTCCTGGGCACATATCCAGAAGATGTCCCACCCAGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAAGATGCCCCTTAACAGAGGAATGGATACAGAAAATGTG
GTACATTTACACAATGGAATACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGG
ATATAAGCCCAAAACTTANGATACCCAAGATATAAGATACACTTTGCTAA
ATGCATGAAACTCAAGAATGAAGACCAAAGTGTGGACACTGTGCCCCTTC
TTANAATTGGGACAAAACACCCATGGAAGGGAGTACAGAGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_b05.b1 MSMg01no423_b05.b1 CHROMAT_FILE:
MSMg01no423_b05.b1 PHD_FILE: MSMg01no423_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:40 2005
         (180 letters)



>mm_chr2_63337634_63338214
          Length = 581

 Score =  319 bits (165), Expect = 6e-92
 Identities = 174/177 (98%), Gaps = 1/177 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgtatgacaaagaaaattatt-aaaaaaaaccacacacacaaaaaccctccag 63
           ||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 gaattcatgtaggaaaaagaaaattattaaaaaaaaaccacacacacaaaaaccctccag 322

                                                                       
Query: 64  ttcttcccaagttctcacagcttgaaggggactccaacagagaatctccagtaaaatgca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttcccaagttctcacagcttgaaggggactccaacagagaatctccagtaaaatgca 262

                                                                    
Query: 124 aatatccagagcctcaccaggtccatgtgagtctctaattggcagccttcctagcag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatccagagcctcaccaggtccatgtgagtctctaattggcagccttcctagcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 581
Length adjustment: 8
Effective length of query: 172
Effective length of database: 573
Effective search space:    98556
Effective search space used:    98556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)