BAC Information

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BAC

Clone NameMSMg01-423F12
Chromosome2 (Build37)
Map Location 172,081,151 - 172,081,561
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043744, Cbln4, Mc3r
Downstream gene2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423F12.T7 (MSMg01no423_f12.b1)MSMg01-423F12.TJ (MSMg01no423_f12.g1)
ACCAG517522AG517523
length746760
length of high quality
(start - end)
249 (55 - 303)416 (64 - 479)
definitionCHROMAT_FILE: MSMg01no423_f12.b1 PHD_FILE: MSMg01no423_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:00 2005CHROMAT_FILE: MSMg01no423_f12.g1 PHD_FILE: MSMg01no423_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTATACGACTCACTTTCAAGAGAGGATCCGCGGAATTCCCTATCT
CCTGCTAGCCCTTTTTTGGCTTCCGTTCTTCTGTCTCCACCTCTGAGGAA
TTCTTGAAATGAAAGCAGGTCCCAGGACAACCAGGGGCAACCTTCTCATC
TCAAGACCCTAGTACAATGGCATCATCTAAGAGCGTAGATGGCAATGTGC
TCATAGATCACAAGGATTAGGACTTGGACCTCTTCAGGGAGGGAGGTCAT
GCCATCCACCAGGTGATAGGAAGGTAATTCTCCAGGCAATTCGGGGTTGT
GTGCTTTTTCCACAAGAGGAGCGTGATTGGAGGGAACAAAGGACCTTAAG
AGTGTTGCTGCCAGTGCATGATACAAGTCAGCTAAAACATGGCTGACACA
GATTAGGGGATGTGAGACAACTAAAGGTCGCTGACACCAGATTCTCAGCC
TCCCTGGGGCTAGCAGTGATGTAATGCTAGATGCTAATTTGTGGCCAAAT
GCCAGTTTCTTGTGGATTTGTATTTGGCCTTGCCGACAGGGGCGCAGACC
CTCACCTTTTGAGGTCAGAGGCCAGGACCCTCACCTGTTGATTTTGCCTC
CTGGTGTTGCCCACAGGACCGTGGAGGCCTCTGTGCGCTTACTTGGCCGC
TGCGCATGGTGCTTGCAATCCTTCGCCTTTTGTACACCAATTTTTGCCCC
TTCCTCCTTATGTTTGGGAAAATAACCTCGTTTTTTTTTCCTTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTGTAGGCCAGGCCAGCTGGCCAGCAAACATGAGAA
TCACACTTAGTGGCTGCTGGCCTGTTTGGCAGCATCTCTCGGTGTTTGGT
TGGTGGACTGAAAGTTGACGTTCTCTTAGGAGAGATCCTGGCCTTCAGGG
GAGGATGTCCACAGGGTTGCTCACAACCAATGTTAGAAGAGTAAACACTT
GTTTTGCACTAATGGTGTGTCAACTACTATACGGAGCTTTCACATGTATT
TCTTTTGCCTGTGCATAGTGAGTGTGTCTGCATGTGTGCATAGTGAGTGT
GTCTGCATGTGTGCATAGTGAGTGTGTCTGCATGTGTGCATAGTGAATGT
GTCAGCATGTGTGCATAGTGAGTGTGTCTGCATGTATGCATAATGAGTGT
GTTAGCATGTAGGTATAGTGAGTGTGTCTGGGCATGTATGCTCAGATGAT
AATCTTGGTTGCTTTCCAGTCCCTTGCCCTTTGGTTTTCTTGGATAAACA
TTTTGCTGTCCTTGTTGTCCTCTACCTTCCATTTGCATACCATGTTGCAT
CTTTTCTCCTCTTCGTGTTTCCGTCTTTTACCTACGTCTTCTCCCTTTTC
TCCCTTTTTTCTCTTTCCCCTTTATCTTGCCCCCCCCTCTGTTTTCCCCC
CTCCCTCTCTGTTTTTCTTCCCCACTTTTCTCTCCTTTTTTGTTTCCCCC
CCCCTTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_f12.g1 MSMg01no423_f12.g1 CHROMAT_FILE:
MSMg01no423_f12.g1 PHD_FILE: MSMg01no423_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:00 2005
         (416 letters)



>mm_chr2_172081104_172081919
          Length = 816

 Score =  609 bits (315), Expect = e-178
 Identities = 390/421 (92%), Gaps = 16/421 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtaggccaggccagctggccagcaaacatgagaatcacacttagtggctgctggcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 actgtaggccaggccagctggccagcaaacatgagaatcacacttagtggctgctggcct 399

                                                                       
Query: 61  gtttggcagcatctctcggtgtttggttggtggactgaaagttgacgttctcttaggaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gtttggcagcatctctcggtgtttggttggtggactgaaagttgacgttctcttaggaga 339

                                                                       
Query: 121 gatcctggccttcaggggaggatgtccacagggttgctcacaaccaatgttagaagagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gatcctggccttcaggggaggatgtccacagggttgctcacaaccaatgttagaagagta 279

                                                                       
Query: 181 aacacttgttttgcactaatggtgtgtcaactactatacggagctttcacatgtatttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aacacttgttttgcactaatggtgtgtcaactactatacggagctttcacatgtatttct 219

                                                                       
Query: 241 tttgcctgtgcatagtgagtgtgtctgcatgtgtgcatagtgagtgtgtctgcatgtgtg 300
           ||||||||||||||||||||||||||||||||||||||||||    |||||||| || ||
Sbjct: 218 tttgcctgtgcatagtgagtgtgtctgcatgtgtgcatagtg----tgtctgcacgtatg 163

                                                                       
Query: 301 catagtgagtgtgtctgcatgtgtgcatagtga--atgtgtcagcatgtgtgcatagtga 358
            |||||||||||||||||| || || |||||||  |||| | |  |||| ||||||||||
Sbjct: 162 tatagtgagtgtgtctgcacgtatgtatagtgagcatgtctga--atgtatgcatagtga 105

                                                                       
Query: 359 gtgtgtctgcatgtatgcataatgagtgtg--ttagcatgtaggt--atagtgagtgtgt 414
            ||||||||||||| || ||| ||| ||||  |  |||||  |||  ||||||| |||||
Sbjct: 104 ctgtgtctgcatgtgtgtatagtgaatgtgcct--gcatg--ggtgtatagtgaatgtgt 49

            
Query: 415 c 415
           |
Sbjct: 48  c 48


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)