BAC Information

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BAC

Clone NameMSMg01-424I13
Chromosome2 (Build37)
Map Location 48,549,755 - 48,549,965
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383691, LOC100041457
Downstream geneLOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424I13.T7 (MSMg01no424_i13.b1)MSMg01-424I13.TJ (MSMg01no424_i13.g1)
ACCAG518431AG518432
length732730
length of high quality
(start - end)
244 (70 - 313)210 (70 - 279)
definitionCHROMAT_FILE: MSMg01no424_i13.b1 PHD_FILE: MSMg01no424_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:31 2005CHROMAT_FILE: MSMg01no424_i13.g1 PHD_FILE: MSMg01no424_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCCCCTCTGAGCCCTATTTTTTAATGAGGTTATTTGATTTT
CTGGAGTACACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCACT
ATCTGATTTAGTATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACAGTGTCTTTTGCCTTGTAGAAGCTCTGCAATTTTATG
AGGTCATTTGTAGATTCTCGATATTACAGCACAAGCCATTGCTGTTCTAT
TCAGGAACTTTTCTCTTGTTCCCATATCTTCGAGGCTTTTCCCTACTTTC
TCCTCTTTAAGTTTCAGTGTCTCTGGTTTTATGTGGAGATCCTTAATCCA
CTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCGATTCGCATTC
TTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTG
TCTTTTTTCCACTGGATGGCTTTTGCTCCCTTGTCGAAGACCAAGTGACC
ATAGGTGTGTGGGTTCAATTCTGTGTCTTCAATTCTATTCCATTGGTCTA
CTTGTCTGTCTCTATATCAGTACCTTGCAGTTTTTATCACAATTGCTCTA
TAGTGCAGGGTTAGGCCAGGCATGGTGATTCCTCCAGAGGCTTTTTTTTT
TATCCTTAAGCATACCTTTTACTATCTTAGGC
NCCATGATAGGGTAGCCTGGCGGCGCCTGTTTCAAACAXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTAAGAATGCTAACTAGTTGAGCCATCACA
TGACCATTCAAGTTTCATTACAAAGGGCTAGATTTTATAACTTCTGCTTT
AACAAGTCAGTTTTCAAATTTTCTGCTTTAATAATCTGCATGCTTGGTGG
GGGGGAACCAATTCTCCTTTATTTAACTGCCTTTTAAAGCACTTAATATA
GCCATCTACACAGACACTACTCATAGTAAGTGTGTCTTCATGACAGCAGT
GAGAACAAAAGTTTTTTTTTTCCTTCTCCAAGGATGCCGAGAATGTAGTA
AAATCTTCAATACTTATTTAAAGGCACCTCAAGCTTTCTCCTGTGAGACC
ATGTTTTACTTCCCTTCCATCCTTCAGCTCTTTCATTCTCTGAAGATTCT
GACTATACATCCGCTGTCCTTTTATAGATAACACTGTTTACCCTCAGCTC
TCCGTGTGCGTCTATGACTGATCCCATGAATTTTGTACGCACTACTGTTG
AGTGCCCCCCATTAATATGATGCCTTTCTCCTGTTCCGTTTTTATCATGT
TATCTCTTTTCCCTTTCTTCCTCCTCCCTCTCTGCCTCTTTTAACCTCTT
TTGTACCGTTCTCCTCTGTAAGTCTCTCCTTTATCCGTATGCCTTCTTCT
CAGTGACTTCTGGAACACCTTACTCTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_i13.g1 MSMg01no424_i13.g1 CHROMAT_FILE:
MSMg01no424_i13.g1 PHD_FILE: MSMg01no424_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:31 2005
         (210 letters)



>mm_chr2_48549555_48550165
          Length = 611

 Score =  385 bits (199), Expect = e-111
 Identities = 208/211 (98%), Gaps = 1/211 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaagaatgctaactagttgagccatcacatgaccattcaagtttcattacaaagggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaagaatgctaactagttgagccatcacatgaccattcaagtttcattacaaagggct 260

                                                                       
Query: 61  agattttataacttctgctttaacaagtcagttttcaaattttctgctttaataatctgc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 agattttataacttctgctttaacaagtcagttttcaaattttctgctttaataatctac 320

                                                                       
Query: 121 atgcttggtggggggg-aaccaattctcctttatttaactgccttttaaagcacttaata 179
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 atgcttggtggggggggaaccaattctcctttatttaactgccttttaaagcacttaaga 380

                                          
Query: 180 tagccatctacacagacactactcatagtaa 210
           |||||||||||||||||||||||||||||||
Sbjct: 381 tagccatctacacagacactactcatagtaa 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 611
Length adjustment: 9
Effective length of query: 201
Effective length of database: 602
Effective search space:   121002
Effective search space used:   121002
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)