BAC Information

Click to search

BAC

Clone NameMSMg01-424O23
Chromosome2 (Build37)
Map Location 86,669,099 - 86,669,614
singlet/doubletsinglet
Overlap geneOlfr1094
Upstream geneOlfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141
Downstream geneOlfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424O23.T7 (MSMg01no424_o23.b1)MSMg01-424O23.TJ (MSMg01no424_o23.g1)
ACCAG518737AG518738
length752753
length of high quality
(start - end)		516 (68 - 583)557 (74 - 630)
definitionCHROMAT_FILE: MSMg01no424_o23.b1 PHD_FILE: MSMg01no424_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:00 2005CHROMAT_FILE: MSMg01no424_o23.g1 PHD_FILE: MSMg01no424_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATCTTATTAACTGCAAAGAGTATGAAACTGTAAGAGACCAGGACAATC
AGGATGGTGATGATCTCAATGGAGCCTACACAATAGAAGAGCAGAAGCTG
ATTTATATTTGTGTTTGAACAAGAAATAGCAAGCAATGGAGGAATATCAC
AGAAGACATGCCTAATCTCATTGGATGCACAGAAAGAAAGGCTAAAGGTA
GCCACTGTATGTATAGTAGCATGCATAATTCCACCTGAATAACAAGCTAT
AATGAGAGGTATGTAGACTCTAGGTGACATTTTCACTGCATACAGAAGTG
GATTGTAGATAGCTACAAAGCGATCATAAGCCATTGCTGCCAACAGGAAG
CATTCTGTGGTTCCAAATGTAACAAAGAGAAACATCTCTGTTACACAACC
AGGGTATGAAATAGATTTATCATTTGAAAGAAAATTGACCAACATCTTCG
GAGTGACAACGGTGGAATAACAGGCATCTAGGAATGATAAAACACTTAAA
AAATAATACATTGGATTGTGAAGCCGGGAATCTCCAATGACAAGCAAAAC
AAGTCCTAAGTTGCCTATGAGAGTAAAAAGATAAATCACCAAAAACAGAA
GAAATAACCAGACTTGCCGGTCAGCGTCATCAGTGAAGCCTGTTAGTATA
AACATGGCGGCGTCTGTCCCATTGTTCACTGGCATTCCTCGCACAGTGTA
AC

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCATTTAGTTCTATACCCCATTTTTA
AAATTGGATTGTTTGGGATTTTTGGAGGTTAGCTTCTTGAGTTCTTTATA
TATTTTTGGATATAGCCATCTATCATATGTGGGGTTAGTGAAGATTTTTT
CCCCAGGCTCTATGTTGCAGATGTTTCCTGTTGACTATATCCTTTGCCTT
ACAAAAGTTTTTCAATTTAGTGAGGTCCCATTTATCAAGTCTTAATTTTA
GAGCCTGAGTCATAGGCATTCTGTATAGAAAATCTGCAAACACCCACCTC
CACGCCATGCCAATGAGTTCGAGGATCTTTCCCACTATCTCTTCTATTAG
ATTCAGCGTATCTGGTTTGATGTTGAAGTCTTTTTCACTTGGGCTTGAGC
TTTGGGAAAAGTAAGCAATATGGATCTATTTTCATTTTTCTACATACTGA
CAACCAGTTAGATCAGCACCATTTATTGAAGATGCTTCGTCTTGTCCATT
GTGTATTTTTGGCTTCTTTGTCAAAAAGCATATGTCCATAAGTGTGTGCT
TTTTTATTAGATATTTTCTTTATTTACATTTCAAATGTTGTCCCCTTTCC
TAGTTTCCCCCTCTGAAAATCCCCTATCCTCTCCTCCCTGGCCCTGCTCC
CCTACCCATTCACTCCCACTTCCTTGTCCCGTCATTTCCCTACTCTGTGG
TTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_o23.b1 MSMg01no424_o23.b1 CHROMAT_FILE:
MSMg01no424_o23.b1 PHD_FILE: MSMg01no424_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:00 2005
         (516 letters)



>mm_chr2_86668899_86669814
          Length = 916

 Score =  967 bits (500), Expect = 0.0
 Identities = 512/516 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagagtatgaaactgtaagagaccaggacaatcaggatggtgatgatctcaatggagcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 aagagtatgaaactgtaagagaccaggacaatcaggatggtgatgatctcaatggagcct 657

                                                                       
Query: 61  acacaatagaagagcagaagctgatttatatttgtgtttgaacaagaaatagcaagcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 acacaatagaagagcagaagctgatttatatttgtgtttgaacaagaaatagcaagcaat 597

                                                                       
Query: 121 ggaggaatatcacagaagacatgcctaatctcattggatgcacagaaagaaaggctaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ggaggaatatcacagaagacatgcctaatctcattggatgcacagaaagaaaggctaaag 537

                                                                       
Query: 181 gtagccactgtatgtatagtagcatgcataattccacctgaataacaagctataatgaga 240
           |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 536 gtagccactgtatgtatagtagcatgcataatccctcctgaataacaagctataatgaga 477

                                                                       
Query: 241 ggtatgtagactctaggtgacattttcactgcatacagaagtggattgtagatagctaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ggtatgtagactctaggtgacattttcactgcatacagaagtggattgtagatagctaca 417

                                                                       
Query: 301 aagcgatcataagccattgctgccaacaggaagcattctgtggttccaaatgtaacaaag 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 416 aagcgatcataagccattgctgccaacaggaagcattctgtggttccaaacgtaacaaag 357

                                                                       
Query: 361 agaaacatctctgttacacaaccagggtatgaaatagatttatcatttgaaagaaaattg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 356 agaaacatctctgttacacaaccagggtatgaaatagatttatcatttgaaataaaattg 297

                                                                       
Query: 421 accaacatcttcggagtgacaacggtggaataacaggcatctaggaatgataaaacactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 accaacatcttcggagtgacaacggtggaataacaggcatctaggaatgataaaacactt 237

                                               
Query: 481 aaaaaataatacattggattgtgaagccgggaatct 516
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 aaaaaataatacattggattgtgaagccgggaatct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |