Query= MSMg01no425_c09.b1 MSMg01no425_c09.b1 CHROMAT_FILE:
MSMg01no425_c09.b1 PHD_FILE: MSMg01no425_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:17 2005
(579 letters)
>mm_chr2_138190323_138191301
Length = 979
Score = 762 bits (394), Expect = 0.0
Identities = 499/580 (86%), Gaps = 73/580 (12%)
Strand = Plus / Minus
Query: 1 tgcttttattccgttgacatttagatagactttaaaattaggtttttcggaagccatctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 894 tgcttttattccgttgacatttagatagactttaaaattaggtttttcggaagtcatctg 835
Query: 61 taatgcaatattctccaataggtctttctacaatgattaaaaaaaaaaaaaacaccctgt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 834 taatgcaatattctccaataggtctttctacaatgattaaaaaaaaaaaaaa-accctgt 776
Query: 121 cttatctgtaacctcttaccaatgtttgctgtccaaacctgagggcacttcatctggcta 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 775 cttatctgtaacctcttaccaatgtgtgctgtccaaacctgagggcacttcatctggcta 716
Query: 181 ttgagcccttgaggttaatagaaaccaggtactaaatttgggatttttactttactttac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ttgagcccttgaggttaatagaaaccaggtactaaatttgggatttttactttactttac 656
Query: 241 tatcatatacttaaacttacataactttatgtggccaatagctaatctattggacaatag 300
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 655 tatcatagacttaaacttacataactttatgtggccagtagctaatctattggacaatag 596
Query: 301 gtctggtaaatcttcagcttgcaaatagctttcaatcaggctggatataggtcttagaat 360
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gtctggtaaatcttcagctcgaaaatagctttcaatcaggctggatataggtcttagaat 536
Query: 361 taggatagggcgtaagtatagttccctggttcagctggtctttcaatcaggctggatata 420
||||||||||||||||||||||||||||||||||||||
Sbjct: 535 taggatagggcgtaagtatagttccctggttcagctgg---------------------- 498
Query: 421 ggtcttagaattgggatagggcgtaagtatagttccctggttcagctggtctattaaaat 480
|| |||||||||
Sbjct: 497 ----------------------------------------------tg---tattaaaat 487
Query: 481 ctactcagccctgctgggtccttaaaagagcacatttctcttat-tttttttaatagcta 539
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 486 ctactcagctctgctgggtccttaaaagagcacatttctcttatgtttttttaataggta 427
Query: 540 gtctcattacttaataatagcattttagtcagtgccccag 579
||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtctcattacttaataatagcattttagtcagtgccccag 387
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_c09.g1 MSMg01no425_c09.g1 CHROMAT_FILE:
MSMg01no425_c09.g1 PHD_FILE: MSMg01no425_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:17 2005
(562 letters)
>mm_chr2_138019957_138020918
Length = 962
Score = 859 bits (444), Expect = 0.0
Identities = 515/562 (91%), Gaps = 37/562 (6%)
Strand = Plus / Plus
Query: 1 ttggttccatccattcggatgtatttactgtattgctgtgagacattttctgaattttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggttccatccattcggatgtatttactgtattgctgtgagacattttctgaattttaa 260
Query: 61 taaaaaataatagtcaataggatggatgtgattcacagttgtggttccaactgtgaaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaaaataatagtcaataggatggatgtgattcacagttgtggttccaactgtgaaagc 320
Query: 121 ataatagccctgattactgttattactattatggctattatatgattaaacactgcttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataatagccctgattactgttattactattatggctattatatgattaaacactgcttca 380
Query: 181 taaaaacatccctgctttctccaagttgaatccattttcctcagatggagttccccttcc 240
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaaacatccctgcattctccaaattgaatccattttcctcagatggagttccccttcc 440
Query: 241 ttttatgtttagaatgcttttggccagagagacagagacagagacagagacagagacaga 300
||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 ttttatggggagaatgcttttggccagagagacagagacagagaaagagacagaga---- 496
Query: 301 gacagagacagagacagagacagagacagagacagagacatagacagagagatcatacaa 360
|||||| |||||||||||||||||||||||||
Sbjct: 497 ----------------------------gagacatagacatagacagagagatcatacaa 528
Query: 361 cacccaagatactttccaaacacatatataagtcaggataggagatagaaaattcctagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 cacccaagatactttccaaacacatatataagtcaggataggagatagaaaattcctagt 588
Query: 421 gaatttctttggttaaaaaacaaaacaaaacaaaacaaaacaaaacttgtagatggttca 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 589 gaatttctttggttaaaaaacaaaacaaaacaaaacaaaac-----ttgtagatggttca 643
Query: 481 gctttgtttcaatctaataacttcaggaacatgtgttactttgtgcctgtattttcacac 540
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 644 gctttgtttctatctaataacttcaggaacatatgttactttgtgcctgtattttcgcac 703
Query: 541 agttaaacatatgtatttcata 562
||||||||||||||||||||||
Sbjct: 704 agttaaacatatgtatttcata 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
