BAC Information

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BAC

Clone NameMSMg01-425I01
Chromosome2 (Build37)
Map Location 142,014,268 - 142,014,567
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor, LOC668915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425I01.T7 (MSMg01no425_i01.b1)MSMg01-425I01.TJ (MSMg01no425_i01.g1)
ACCAG519170AG519171
length729794
length of high quality
(start - end)
310 (43 - 352)35 (70 - 104)
definitionCHROMAT_FILE: MSMg01no425_i01.b1 PHD_FILE: MSMg01no425_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:44 2005CHROMAT_FILE: MSMg01no425_i01.g1 PHD_FILE: MSMg01no425_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTGGAAGAATGACACTTACTCAAGGATCCCAAGGGCTCCTAAGTATC
ATAGAAATTCATTGATCAAATACATGCCAGGAACTAGTTGTCATGGTTGT
CCCATTAAAGAGGTCCTAGATCTGGCTGCAGTTGTATGTTCCCATGATCT
AGCACTTTAGAATAAGATGCAGGAGGGTTACTACAAGTTGGAAAACAACT
TAGACTGAGTGGTGAATGCATCCAGGGCTACTATATACAGAGAGACCTGC
TGAGAGGAAGGAGGAGGGGAAGGAGAATAGGAGAAGGGAGAGGATGAGGN
TNTTTNNNTTTTTTNTTNNTTTTTTTTTTTTTTTTTTTTTTTNTNNTTTT
TTTTTTTTTTTTTNTNNTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTT
TTNTTTNTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTT
TTTTTTTTTTTTTTTNTTTTTTTTNTTTTTTTTTTTTTTNNNNTTTTTTT
TTTTTTTTTTTTNTTTTTTTTTTTTTTTNTTTTTTNNTTTTTTTTTTTTT
TTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTT
TTTTTNTTNTTTTTTTTCTTTTTNTTTTCCTNTTTCTNNCTTTTTTTTCC
TTTTCTCTCTTTCTTCCTCCCTCCTTCCN
TAATTTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATCATGGTAGAAAATATATGGTGTCAGGAC
CGCTCCTTCCACGGCAGTGATGTGGAGCATAACGTGTTCACGTTTTGGTA
GATCAGGCAAGAGGNACAACCGGAGCCCGGTTAANATCAAACGCCAGATA
CCCTTTCAGGGCTTTTCTCTAACAAGCCATTTTTGCCTACTTATTCTGCA
TATGCTAAAGGATCTACAACCTTCCCAAAACAGAACTACTATTTGGNTAC
CAAGTTATCCAAACTTATGAACTTTCTGGGAACACAATGCAAACCCTGGT
TGAAAAGGGAAAAAAAAAAAGTTTTCCCAAATTATGGGAAGAAAATAAAA
AACGCTTTTTTTTTCAAATTCTAAAACCCTCTAAGGGGGCTTTCCCTTGA
ATTTATTTTTTGTTTCCCGAAAATTTTTTTACCCTTAAAAAGGGCCCAAA
AAGTGCCCTTTCTTCCAATTTGAAAAAAAAAACCGGGGAAACTTTTTTTC
GGTGGTTTTTTTAAAAAAAAAACCCTTTTTGTGGCCCCCAAAAAAAGGGG
CCCCCCCCCCCCCAAGAANCCTTTTCTCTCTCCCCTTTTTNTAAAAAATC
TTTTTTTCCCCAAAAAAAAATATATTTTTATATAATACACACACTTCCTC
CCTTCAAAAAATCCCCCCTTTAAAAAATATTTTCTTTCCTCCCTCCCTCT
CCCTCTCNTTAAAAAAAAAGGGGGTTTTGTTTTATGAAATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_i01.b1 MSMg01no425_i01.b1 CHROMAT_FILE:
MSMg01no425_i01.b1 PHD_FILE: MSMg01no425_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:44 2005
         (310 letters)



>mm_chr2_142014109_142014818
          Length = 710

 Score =  547 bits (283), Expect = e-160
 Identities = 297/303 (98%), Gaps = 3/303 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactggaagaatgacacttactcaaggatcccaagggctcctaagtatcatagaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gaattcactggaagaatgacacttactcaaggatcccaagggctcctaagtatcatagaa 400

                                                                       
Query: 65  attcattgatcaaatacatgccaggaactagttgtcatggttgtcccattaaagaggtcc 124
           |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 399 attcattgatcaaatacatgccaggaactagttggcatggttgtcccattaaggaggtcc 340

                                                                       
Query: 125 tagatctggctgcagttgtatgttcccatgatctagcactttagaataagatgcaggagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tagatctggctgcagttgtatgttcccatgatctagcactttagaataagatgcaggagg 280

                                                                       
Query: 185 gttactacaagttggaaaacaacttagactgagtggtgaatgcatccagggctactatat 244
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gttattacaagttggaaaacaacttagactgagtggtgaatgcatccagggctactatat 220

                                                                       
Query: 245 acagagagacctgctgagaggaaggaggaggggaaggagaataggagaagggagaggatg 304
           ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 219 acagagagacctgctgagaggaaggaggaggggaaggagaat---agaagggagaggatg 163

              
Query: 305 agg 307
           |||
Sbjct: 162 agg 160


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)