Query= MSMg01no425_m12.b1 MSMg01no425_m12.b1 CHROMAT_FILE:
MSMg01no425_m12.b1 PHD_FILE: MSMg01no425_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:05 2005
(426 letters)
>mm_chr2_112306081_112306906
Length = 826
Score = 625 bits (323), Expect = 0.0
Identities = 349/363 (96%), Gaps = 10/363 (2%)
Strand = Plus / Minus
Query: 1 agctaattgaccaaggaaacataatactgcatttacacaaactcttagaagaatttgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agctaattgaccaaggaaacataatactgcatttacacaaactcttagaagaatttgtct 299
Query: 61 cagggagtaggataaagttgaaaatctcagcctcagctacagctacagagctgcagttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 cagggagtaggataaagttgaaaatctcagcctcagctacagctacagagctgcagttaa 239
Query: 121 acagaacaagcaccagaccatgagccaaatgataggatgggaaactgaggcaggaagatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 acagaacaagcaccagaccatgagccaaatgataggatgggaaactgaggcaggaagatg 179
Query: 181 gacaggtcaaggccagcgtgggtaacttactgagattctatctcaaccagatctaaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gacaggtcaaggccagcgtgggtaacttactgagattctatctcaaccagatctaaaaac 119
Query: 241 tgctta-----ttattttttactagaagccgggcggtggtggcgcacgcctttaatccca 295
|||||| | | |||||||||||||||||||||| |||||||||||||||||
Sbjct: 118 tgcttaagaactaa-----cactagaagccgggcggtggtggtgcacgcctttaatccca 64
Query: 296 gcacttgggaggcagaggcaggtggatttctgagttagaggccagcctgttctacaaagt 355
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 63 gcacttgggaggcagaggcaggcggatttctgagttagaggccagcctgttctacaaagt 4
Query: 356 gag 358
|||
Sbjct: 3 gag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space: 340689
Effective search space used: 340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_m12.g1 MSMg01no425_m12.g1 CHROMAT_FILE:
MSMg01no425_m12.g1 PHD_FILE: MSMg01no425_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:05 2005
(552 letters)
>mm_chr2_112107526_112108475
Length = 950
Score = 1002 bits (518), Expect = 0.0
Identities = 543/556 (97%), Gaps = 10/556 (1%)
Strand = Plus / Plus
Query: 1 actcaaggaagtggtactctcttgaacgaatggaactttcgagagggacttctcgtgcat 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 actcaaggaagtggtactctcttgaaagaatggaactttcgagagggacttctcgtgcat 260
Query: 61 gattcccacataatttccctgctgagctttagataactattttgtatattgtatattgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattcccacataatttccctgctgagctttagataactattttgtatattgtatattgag 320
Query: 121 ttttgtagtcagaacctatagaagccacttctgttcgtattaaccactttccagacttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgtagtcagaacctatagaagccacttctgttcgtattaaccactttccagacttga 380
Query: 181 ccttgagctgacgagcctgacttgaattagaagttttcctttgatttagtgggaagaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttgagctgacgagcctgacttgaattagaagttttcctttgatttagtgggaagaggt 440
Query: 241 gatttttg----gaggaaagttactttttccagactcagttaaaaaacttgagaactgcc 296
||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gat----gcaaggaggaaagttactttttccagactcagttaaaaaacttgagaactgcc 496
Query: 297 acttagttttatgcctcattcggaccagcataagtctttttttttttttaatttaagttt 356
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 497 acttagttttatgcctcattcggaccagcataagtctttttttttatt--atttaagttt 554
Query: 357 ttcccttaagaatcttaaagacttttaaaaattctattctacacaagtttgaaaacatgg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttcccttaagaatcttaaagacttttaaaaattctattctacacaagtttgaaaacatgg 614
Query: 417 ctttagacagtgacttgttaaagcaaggctatcttaccatttccggtctcaggaaatagt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ctttagacagtgacttgttaaagcaaggctatcttaccatttccggtctcaggaaatagt 674
Query: 477 gttcctcctgaccttaagtgttccggaagccagagtagttttagttcctcaaatttgctt 536
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 675 gttcctcctgaccttaagtgttccggaagccagaatagttttagttcctcaaatttgctt 734
Query: 537 gtttttaatgtcttga 552
||||||||||||||||
Sbjct: 735 gtttttaatgtcttga 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 950
Length adjustment: 10
Effective length of query: 542
Effective length of database: 940
Effective search space: 509480
Effective search space used: 509480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
