BAC Information

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BAC

Clone NameMSMg01-425O17
Chromosome2 (Build37)
Map Location 43,100,680 - 43,101,211
singlet/doubletsinglet
Overlap genenone
Upstream geneLrp1b, LOC100041228
Downstream geneLOC100041245, Kynu, Arhgap15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425O17.T7 (MSMg01no425_o17.b1)MSMg01-425O17.TJ (MSMg01no425_o17.g1)
ACCAG519486AG519487
length7781,390
length of high quality
(start - end)		542 (30 - 571)---
definitionCHROMAT_FILE: MSMg01no425_o17.b1 PHD_FILE: MSMg01no425_o17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:16 2005CHROMAT_FILE: MSMg01no425_o17.g1 PHD_FILE: MSMg01no425_o17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTATACGACTCACTATAGGTTCACGATCCGCGGAATTCTGCCTTCGCT
TATTCTGTTACAAGGAGGTAAACAAACAAACAAACAAACACACACACACA
CACACATGCCAGTGGGCAAAACAACCATCTATAAAATACTTGTTGAGTTG
ACAGAGTACAGACTTGACTATAGAACATCATGGAAATAGCTTGCTTGGCT
GAAGAGTGGCATGACTATCGTAATGGAATCAATGAGTAAGCTCAAGAGCA
CAAGTGCACACATAATAAGGCACAACAAGGTACTGTTAACTATGCATGCA
TATCAACAATACAGATCTGTCTCTGTTTGCTAATATGGCTCTTTGAGGTG
AAGAATGTGCTGCTGGGGGTAATCCAACTTCATTGCATTTGCAAAGCTGC
TCACAGGGTTTCTGTTCACATCTCCCTGCATCTCCACTAAGGGAAATCAT
TCCATCATCTACTCAGGCCAATTATTGCTAGCAAACTGGTAATTCAGTTA
CAAAATAATATTAACATATCCTTTTATAAGTGAACGAGTACCTGGGGGAA
ATGATTCAACCTTGGATGGTTCACAATCACCTATAATTCCATTTTCAGGG
GATCTGACACACTTTTCTGGGCCTCTAAGCCATTACACTCCAATGGACAG
CCAGNCCCTATCACACACACACACCCACACTCTCATTTTTCTCNCATACA
CACACATTATAACAATAACTTGTAGGAGGTTCTAAATGTTTACTACCCCC
CCCCTGGCTTTAATAATTGAACGGGAGG

TTATACGCTCACGAGCGGGCACCGCCTGGCGGCGCCCCTCCCNCTCATCT
ATAGGTGATGCACTACCTACTNACACAGCAGTATTCTCCGCAGTGCATAT
CTTCCTAGTTAGTCTATTATATACGTCTAGCAACAAAGATCCCCCACTTT
GCTGAGCATGCTGAAGTATCAGCACAGCCAGCGTTATACGTAGGGCATTT
TTGAGCGGTGTACATAGGCCCATTCCTACATTGATATNTCATATAGCTAA
GGACCGATAGATGTTGCTATTACTTGTGACTCTTGAGTATAGCCGATTAC
GGTTGCCCATTTCCAGAGCCAGTACTTGCACCATTTACGTCCCTACCGCT
TCTGTTGACTCTCCCCCGAATACAGCTCACTACTAGACTCCTAGTATTCG
TCTCCCCATCTTATGTTAGCCCTCATCTATTAGACTCTATTCACCTATCT
ATCCTCTGTCATCTCCGCATTTTATTTAGTGCTCTGCATTCATTACTCCA
CGCTAGTTGAGATGAACACCTCCTCTTTTTATCCTTCGTGCCCGTCCCAT
AATCCCACTGTCCGTTGTCGTCCTTTATGTCGTCGAGATCTGTGACATTA
CCACCCGNTTCTCAGCTTGTGTATCATAACTCCTTTACCATTAAAGTAAT
GTACGTACTCGTCTTGGAGGCGCGCTATGCTCTGTAGTTAACGCACCGCC
CTACTCACTCGCCCTATGTTACACGCTACTTCATTCTTATCACATATTCC
TCAAATATGTACTAGTGACTCACTTATGATGAACTATTCACCTGAATCTG
CATTAATTAGTACATCACAGTGCACACATTGTTCCCCCTCTACTTATGTT
CCCACCTGTATCTCGCCCATCATCTATACTACANACTCATCGTATGGTGC
CTCTCCTAATACTCATCACACATAAAAGTCACATATATCNCCATTAGTCT
TCCTCCCTACTCAACACTACGATGACGAACTACCTACTAGCATAATATCT
CGTGTCTAACATACTCCCTTCTCTCTTTCTTATCTGCAACTTANTCTCAA
CCTNTANACAGCTACGCTAATTCAGCGCTATATACAATTATTTGAGAGGT
AGTTATGCTATCATCATCTATCGAACTCACATGTTCTNTATCACGTACTC
CGACAATACATTCAGGTTAAACATATATCTCTCGTCTCAGATGAATACAT
CTCACNCCGTTCATNCACGAGCCATATTACGCGACGATAATATAACACGA
TGTGCTATTACCGCGACAGCGACCTATATATATTGTGTATCGAGCTCCGT
CGCAACAGAACCACGACACTCATGATGTCGGTACGCGACTGAACGTGATT
CTGAGAGATTCTCCGTCATCTCATTACTACGACCAACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_o17.b1 MSMg01no425_o17.b1 CHROMAT_FILE:
MSMg01no425_o17.b1 PHD_FILE: MSMg01no425_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:16 2005
         (542 letters)



>mm_chr2_43100403_43101344
          Length = 942

 Score =  926 bits (479), Expect = 0.0
 Identities = 522/539 (96%), Gaps = 8/539 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattctgcct-tcgcttattctgttacaaggaggtaaacaaacaaacaaacaaacaca 63
           |||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||  
Sbjct: 809 ggaattctgcctgt-gctaattctgttacaaggaggtaaacaaacaaacaaacaaaca-- 753

                                                                       
Query: 64  cacacacacacacatgccagtgggcaaaacaaccatctataaaatacttgttgagttgac 123
              | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 752 ---a-acacacacatgccagtgggcaaaacaaccatcaataaaatacttgttgagttgac 697

                                                                       
Query: 124 agagtacagacttgactatagaacatcatggaaatagcttgcttggctgaagagtggcat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 agagtacagacttgactatagaacatcatggaaatagcttgcttggctgaagagtggcat 637

                                                                       
Query: 184 gactatcgtaatggaatcaatgagtaagctcaagagcacaagtgcacacataataaggca 243
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gactatcgtaatggaatcagtgagtaagctcaagagcacaagtgcacacataataaggca 577

                                                                       
Query: 244 caacaaggtactgttaactatgcatgcatatcaacaatacagatctgtctctgtttgcta 303
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cagcaaggtactgttaactatgcatgcatatcaacaatacagatctgtctctgtttgcta 517

                                                                       
Query: 304 atatggctctttgaggtgaagaatgtgctgctgggggtaatccaacttcattgcatttgc 363
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 516 atatggctctttgaggtgaagaatgtgctgctggggataatccaacttcattgcatttgc 457

                                                                       
Query: 364 aaagctgctcacagggtttctgttcacatctccctgcatctccactaagggaaatcattc 423
           |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 456 aaagctgctcacagggtttctgttcatatctccctgcatctccactaaggaaaatcattc 397

                                                                       
Query: 424 catcatctactcaggccaattattgctagcaaactggtaattcagttacaaaataatatt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 catcatctactcaggccaattattgctagcaaactggtaattcagttacaaaataatatt 337

                                                                      
Query: 484 aacatatccttttataagtgaacgagtacctgggggaaatgattcaaccttggatggtt 542
           |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 336 aacatatccttttataagtgaatgagtacctgggggaaatgattcagccttggatggtt 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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