Query= MSMg01no426_l04.b1 MSMg01no426_l04.b1 CHROMAT_FILE:
MSMg01no426_l04.b1 PHD_FILE: MSMg01no426_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:20 2005
(494 letters)
>mm_chr2_25726660_25727559
Length = 900
Score = 874 bits (452), Expect = 0.0
Identities = 481/494 (97%), Gaps = 6/494 (1%)
Strand = Plus / Plus
Query: 7 attcttcatagctctgtcctgggcagggcagccatcaagtagcaagccaaagtggatccc 66
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 207 attcttcatagctctgtgctgggcagggaagccatcaagtagcaagccaaagtggatccc 266
Query: 67 agctttgcaggtgtatggtgcaatccttgggtctcgagtcccatgaagtgcttggacagg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agctttgcaggtgtatggtgcaatccttgggtctcgagtcccatgaagtgcttggacagg 326
Query: 127 atagtcagagatagatagctccctgggagcagagacagtttgggagaaagcatggtgagg 186
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 327 atagtcagagatagatagctccctgggagcagagacagtctgggagaaagcgtggtgagg 386
Query: 187 ttctgagcccagaagttcccctatccatcttctgttgctttagatgtgggcagagccaca 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttctgagcccagaagttcccctatccatcttctgttgctttagatgtgggcagagccaca 446
Query: 247 cctttagggcctgacctgtgagaggtccttcttgcttcacctctccacccacaagcccct 306
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 447 cctttagggcctgacctgtgagaggtccttcttgctccacctctccacccacaagcccct 506
Query: 307 tccaatcttaagaaactcctagcaagtgccacctgccaccccaggaagtaagagctgcct 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tccaatcttaagaaactcctagcaagtgccacctgccaccccaggaagtaagagctgcct 566
Query: 367 tgcccctcaaggtcctggcagactcaactcaaagacctcaccctgtcccactgtcaactt 426
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 567 tgcccctcaaggtcctggcagactcaactcaaagacctcaccctgtcccactgttaactt 626
Query: 427 gattcatttgc------ccagtatggaaatggcagcttagtcctacatctccactctaga 480
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 627 gattcatttgcataggcccagtatggaaagggcagcttagtcctacatctccactctaga 686
Query: 481 ggggaccctgttga 494
||||||||||||||
Sbjct: 687 ggggaccctgttga 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 900
Length adjustment: 10
Effective length of query: 484
Effective length of database: 890
Effective search space: 430760
Effective search space used: 430760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no426_l04.g1 MSMg01no426_l04.g1 CHROMAT_FILE:
MSMg01no426_l04.g1 PHD_FILE: MSMg01no426_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:20 2005
(541 letters)
>mm_chr2_25900454_25901394
Length = 941
Score = 1007 bits (521), Expect = 0.0
Identities = 536/541 (99%)
Strand = Plus / Minus
Query: 1 acctagcagccttcagatgaagatgtagaactctcagctcctcctgctccaggcctgcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 acctagcagccttcagatgaagatgtagaactctcagctcctcctgctccaggcctgcct 881
Query: 61 ggatgctgccatgctcctgccttaatgataatggactgaacctctgaacctgtaagcccg 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 ggatgctgccatgctcttgccttaatgataatggactgaacctctgaacctgtaagcccg 821
Query: 121 ccctaactaaatgttgtcctttataagacttgccttggtcatggtgtctgttcacagcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 ccctaactaaatgttgtcctttataagacttgccttggtcatggtgtctgttcacagcag 761
Query: 181 taaaaccctaactaagacaccaggctccatgctcccaggggagcaggatcggtgcttcct 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 760 taaaaccctaactaagacaccaggctccatactcccaggggagcaggatcggtgcttcct 701
Query: 241 ggagtctcaggctgtggaagctttaaaggtcaaacttcatgaatcctgagacccccctga 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 700 ggagtctcaggctgtggaagctttaaagatcaaacttcatgaatcctgagacccccctga 641
Query: 301 aggttcagagagaagggggctgaagtctatcactcagctcatgagggcagctcccaagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aggttcagagagaagggggctgaagtctatcactcagctcatgagggcagctcccaagaa 581
Query: 361 gacttgaatagtcctaggaggtcccctaaccccacccctcaaattgacctctcacaatga 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gacttgaatagtcctaggatgtcccctaaccccacccctcaaattgacctctcacaatga 521
Query: 421 aatctcttttgttgtcacatgttctgccatgtaaatgctgcagtggaaaactggaaagga 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 520 aatctcttttgttgtcacatgttctgccatgtaaatgcttcagtggaaaactggaaagga 461
Query: 481 tggcagctctaatccagccaggaagcaacaggagcaagaaggaggcccttgctctgctcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tggcagctctaatccagccaggaagcaacaggagcaagaaggaggcccttgctctgctcc 401
Query: 541 c 541
|
Sbjct: 400 c 400
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
