BAC Information

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BAC

Clone NameMSMg01-426L20
Chromosome2 (Build37)
Map Location 152,740,568 - 152,740,936
singlet/doubletsinglet
Overlap geneMylk2
Upstream geneAngpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2
Downstream geneFkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426L20.T7 (MSMg01no426_l20.b1)MSMg01-426L20.TJ (MSMg01no426_l20.g1)
ACCAG520107AG520108
length794807
length of high quality
(start - end)		458 (46 - 503)373 (75 - 447)
definitionCHROMAT_FILE: MSMg01no426_l20.b1 PHD_FILE: MSMg01no426_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:23 2005CHROMAT_FILE: MSMg01no426_l20.g1 PHD_FILE: MSMg01no426_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATAATCCCTCTTGAGGCCACACCCCAAAGATCTAGGGACATCTG
ATAAATCCTGCCTCATTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACG
TCATGACCAAGAAGCAAGTTGGGGAGGAAAAGGTTTATTCAGCTTACACT
TCCCATATTGCTGTTCATCACTGAAGGAAGTCAGGACTGGAACTCAAGCA
GGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTCCTTTACT
GGCTTGCCTCCCCTGGCTTGCTCAGCTTGCTCTCTTATAGAACCAAGACT
ACCAGCCCAGAGATGGTCCCACTCACAAGGGGCCTTTCCCCCTTGATCAC
TAATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCTTCAAC
TGAAGCTCCTTTCTCTTACCACTTAGCCTGCTTTGGGGAGATACACATTA
AGGTAGAGATAGGGTACCCTGACCATTCTGATGTAGTGGGAACTTGCCAG
GAGAATTCTTGAGCATTTTATAACACTTACCTGGGGAAACACCCCCACGG
GGGGGTGGGAACCCGGCGGAACCCACTTTGGTTGCCCCGGGTCTGGGGGA
AAAACAACAGCCCTGGTCCTGTCTTCAAAAATTCCAACTTGGTCTTTTTT
CCTCCCCCCCAAATATAATAACCCCTTTTTTAATTTCTCCCTGGTGGTGT
TTTTAAACATACATATTCTTCTCTCTTGATCCACTCCTCTTCAA

AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTGTTGACATTTCCGGTCCTCAGCT
CCACGATCCTGTGTGGGAAGGGGGCTGGGGGCGGTGGACAATCATCTAAG
GAGACAGAGTTGAGCTATTAGTCAGGGGTGAAGACTTCTGGAAAATGTCT
TTAACATCACTGCCTCCTGCCTGATCTGCCCCACCCTCCAAGAAAAATTG
AGTTTACCAAGTGATGCCTGGGAGAACATCTGGTCAGAACTGGACTATCA
GACCCACCCAATTCTAGTTTTGCCTTGTACACCCAAAATGGCCTTGGGCA
TCTGTCTCCAACACTGGGAATGCAGGTTCTCTGCAGGTATGATAAGACAA
CTGGCTGACTGGGCTTAGATACAAGCTATAGGGAGGAGGGGGGCTGCTTT
CCTTCTTCTTCGTCTCTCTGGTCCCTTCTTGTTTCTGTCTTTGGCTTCTC
TCCTATTGTCCACCTCTCTTATTTTTATATATTTCTTTTTTCCACATTTT
TTGTTTTCCATTTGATCACTTTTCTTTTTTGTTTCTCTTCTTGGTCCCTT
CCCTTTTTTCTTTCCCCTTCCCCTCCTTCTCTCTTCTCTTTTCATTTACC
CTCCTTTCTCTCTCTCTTTTCTCTTTTTTTTCCCTTCCCCCTCTTTCTCT
CCTTTCTTTTTCCCTTCCTTACTTATTTCTCTTCCTCTCCTTTCTTTTCA
TCTTCTTTACGTCCATTTTACTTCTACTGCACTCACTATTTTTTCCCTAT
TCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_l20.g1 MSMg01no426_l20.g1 CHROMAT_FILE:
MSMg01no426_l20.g1 PHD_FILE: MSMg01no426_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:23 2005
         (373 letters)



>mm_chr2_152740368_152741140
          Length = 773

 Score =  690 bits (357), Expect = 0.0
 Identities = 366/369 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgttgacatttccggtcctcagctccacgatcctgtgtgggaagggggctgggggcgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 actgttgacatttccggtcctcagctccacgatcctgtgtgggaagggggctgggggcgg 510

                                                                       
Query: 61  tggacaatcatctaaggagacagagttgagctattagtcaggggtgaagacttctggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tggacaatcatctaaggagacagagttgagctattagtcaggggtgaagacttctggaaa 450

                                                                       
Query: 121 atgtctttaacatcactgcctcctgcctgatctgccccaccctccaagaaaaattgagtt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atgtctttaacaccactgcctcctgcctgatctgccccaccctccaagaaaaattgagtt 390

                                                                       
Query: 181 taccaagtgatgcctgggagaacatctggtcagaactggactatcagacccacccaattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 taccaagtgatgcctgggagaacatctggtcagaactggactatcagacccacccaattc 330

                                                                       
Query: 241 tagttttgccttgtacacccaaaatggccttgggcatctgtctccaacactgggaatgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tagttttgccttgtacacccaaaatggccttgggcatctgtctccaacactgggaatgca 270

                                                                       
Query: 301 ggttctctgcaggtatgataagacaactggctgactgggcttagatacaagctataggga 360
           ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggtactctgcaggtacgataagacaactggctgactgggcttagatacaagctataggga 210

                    
Query: 361 ggagggggg 369
           |||||||||
Sbjct: 209 ggagggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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