BAC Information

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BAC

Clone NameMSMg01-427A17
Chromosome2 (Build37)
Map Location 164,257,935 - 164,410,850
singlet/doubletdoublet
Overlap geneSdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a
Upstream geneGdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl
Downstream geneSpinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427A17.T7 (MSMg01no427_a17.b1)MSMg01-427A17.TJ (MSMg01no427_a17.g1)
ACCAG520339AG520340
length736746
length of high quality
(start - end)		577 (82 - 658)507 (85 - 591)
definitionCHROMAT_FILE: MSMg01no427_a17.b1 PHD_FILE: MSMg01no427_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:48 2005CHROMAT_FILE: MSMg01no427_a17.g1 PHD_FILE: MSMg01no427_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:48 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(164,410,274 - 164,410,850)(164,257,935 - 164,258,441)
sequence
NTTTTTGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGG
ATCCGCGGAATTCATATATTCCCAGAAAAGATTCTAGAAGAACTTTAAGC
AAGTGCATCCCTCTCCTGAGTGGTCAGAGACTCTCAGCTTGCGGAGGCCC
CGACCAGCATGTCAGATCCCTTTCCCCACAGTCTGCACTGCGGGTACAGC
GAGTCCACTGACGGCCTCTGGGGAGGGAACGTACTGGCGCCTGTCCAGAG
ATGCTTCCTGGGCTGTTGGGGCAGCAGAGGCCGGAGCCACTGACAAACTC
CTCCTGGTTTAATGCCTCCAAACAGTCTACTGCTTCCTAAAATGAGACTC
TGGGGACTTCTGCCATTCCTGGTCCCCTTCATCCTCCTGTGGAGCATCCA
GGAACCTGAGCTGGCAGAGGGTTTCTTTATCAGTAAGTACTGGGTCCAGT
TCTTAGCACGGAGAGAAGAAACTTGATGGGGTTAGAGAACAAAACACGCT
GCAGGTGACAGTCTCTCCCTCACCTCAGCCCCTGGCCCTGGTGGGTGATG
TTTGGAGTCAGTGTTTCCCCATATCCTGGAAAGATGGCCTGGCTGGACAC
AGCTCTTTGGTCTGTGGTGATTAACTCCCCACCATTATAAAGAATGCTTC
CTGGAGTGCTGGGACTAGTGTGCATTAAATGGACCTGGGGATTAACTACT
CAAAGGGATTTCCACTGAAGGCCCAGCCTCTTCCTA

NTTTTCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACCAGAAACAAGGT
AGTGACTACCCTAACACCATATAAAACTTAGGTAGAGAGTGGTCAGGTCT
TGTGTCTGCCAGCCCCAGGATGTCCTTCACCCAACCACAGAGACACGCGG
TGGAGACAGTGAGAAGGAATGTCCGTTTACCCCTAAGGCGTGAGATTGAG
TGGCAGGAGAGGTCAGGAGAGGCGCTTAGGGATCAGGCTTCCTGCTCCAC
TCTTCCTCCTCCTCTCTCTCCCACAGGCTTCCGGGGAGAGGAGGCTGTGC
CCTCTGTCCACCCCCTTTGCTCAGGAAACTAGATTCTGGGAAAGGAGCTG
GGAGGAAGTCAGGCAGGCATCCCTCTCTCCCCTCACCCCAGAGGGCAGGG
AAATCGATTCAGAGTGCTTGGTACGCGTGGGAGTGGGGAGCCAGCAGGGG
TTAAGTCCTGCTTACAGATGACTTCACGACTCCGGAATCGGGAGCTGTGG
GGTTGCTGGTACTGGAATTCCAGCCCCCGCACAGGGCCCGTGCCTGTGGC
TTTGGCTTGGCAGCACAGCAAGAAGGCTTCTCCGTGGTTGTACCAACTGC
CCTAGAACGCCGGGATGGTCCAAACCCCAACGCCTCGCTAAAATTCCCTA
GGGTTCAAAAACCTGCACGGGCAGGCCTTCCTGGTTTTAAGTGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_a17.b1 MSMg01no427_a17.b1 CHROMAT_FILE:
MSMg01no427_a17.b1 PHD_FILE: MSMg01no427_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:48 2005
         (577 letters)



>mm_chr2_164410074_164411050
          Length = 977

 Score = 1093 bits (565), Expect = 0.0
 Identities = 574/577 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctagaagaactttaagcaagtgcatccctctcctgagtggtcagagactctcagcttg 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 777 ttctagaagaactttaagcaagtgcatccctctcctgagtggccagagactctcagcttg 718

                                                                       
Query: 61  cggaggccccgaccagcatgtcagatccctttccccacagtctgcactgcgggtacagcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 cggaggccccgaccagcatgtcagatccctttccccacagtctgcactgcgggtacagcg 658

                                                                       
Query: 121 agtccactgacggcctctggggagggaacgtactggcgcctgtccagagatgcttcctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 agtccactgacggcctctggggagggaacgtactggcgcctgtccagagatgcttcctgg 598

                                                                       
Query: 181 gctgttggggcagcagaggccggagccactgacaaactcctcctggtttaatgcctccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gctgttggggcagcagaggccggagccactgacaaactcctcctggtttaatgcctccaa 538

                                                                       
Query: 241 acagtctactgcttcctaaaatgagactctggggacttctgccattcctggtccccttca 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 acaggctactgcttcctaaaatgagactctggggacttctgccattcctggtccccttca 478

                                                                       
Query: 301 tcctcctgtggagcatccaggaacctgagctggcagagggtttctttatcagtaagtact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tcctcctgtggagcatccaggaacctgagctggcagagggtttctttatcagtaagtact 418

                                                                       
Query: 361 gggtccagttcttagcacggagagaagaaacttgatggggttagagaacaaaacacgctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gggtccagttcttagcacggagagaagaaacttgatggggttagagaacaaaacacgctg 358

                                                                       
Query: 421 caggtgacagtctctccctcacctcagcccctggccctggtgggtgatgtttggagtcag 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 caggtgacagtgtctccctcacctcagcccctggccctggtgggtgatgtttggagtcag 298

                                                                       
Query: 481 tgtttccccatatcctggaaagatggcctggctggacacagctctttggtctgtggtgat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgtttccccatatcctggaaagatggcctggctggacacagctctttggtctgtggtgat 238

                                                
Query: 541 taactccccaccattataaagaatgcttcctggagtg 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 taactccccaccattataaagaatgcttcctggagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no427_a17.g1 MSMg01no427_a17.g1 CHROMAT_FILE:
MSMg01no427_a17.g1 PHD_FILE: MSMg01no427_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:48 2005
         (507 letters)



>mm_chr2_164257735_164258641
          Length = 907

 Score =  965 bits (499), Expect = 0.0
 Identities = 505/507 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaccagaaacaaggtagtgactaccctaacaccatataaaacttaggtagagagtggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaccagaaacaaggtagtgactaccctaacaccatataaaacttaggtagagagtggtc 260

                                                                       
Query: 61  aggtcttgtgtctgccagccccaggatgtccttcacccaaccacagagacacgcggtgga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 aggtcttgtgtctgccagccccaggatgtccttcacccaaccacagagacacacggtgga 320

                                                                       
Query: 121 gacagtgagaaggaatgtccgtttacccctaaggcgtgagattgagtggcaggagaggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacagtgagaaggaatgtccgtttacccctaaggcgtgagattgagtggcaggagaggtc 380

                                                                       
Query: 181 aggagaggcgcttagggatcaggcttcctgctccactcttcctcctcctctctctcccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggagaggcgcttagggatcaggcttcctgctccactcttcctcctcctctctctcccac 440

                                                                       
Query: 241 aggcttccggggagaggaggctgtgccctctgtccaccccctttgctcaggaaactagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcttccggggagaggaggctgtgccctctgtccaccccctttgctcaggaaactagat 500

                                                                       
Query: 301 tctgggaaaggagctgggaggaagtcaggcaggcatccctctctcccctcaccccagagg 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tctgggaaaggagctgggaggaagtcaggcaggcatccctctctccccccaccccagagg 560

                                                                       
Query: 361 gcagggaaatcgattcagagtgcttggtacgcgtgggagtggggagccagcaggggttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcagggaaatcgattcagagtgcttggtacgcgtgggagtggggagccagcaggggttaa 620

                                                                       
Query: 421 gtcctgcttacagatgacttcacgactccggaatcgggagctgtggggttgctggtactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcctgcttacagatgacttcacgactccggaatcgggagctgtggggttgctggtactg 680

                                      
Query: 481 gaattccagcccccgcacagggcccgt 507
           |||||||||||||||||||||||||||
Sbjct: 681 gaattccagcccccgcacagggcccgt 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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