Query= MSMg01no427_d01.b1 MSMg01no427_d01.b1 CHROMAT_FILE:
MSMg01no427_d01.b1 PHD_FILE: MSMg01no427_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:59 2005
(544 letters)
>mm_chr2_180291958_180292900
Length = 943
Score = 961 bits (497), Expect = 0.0
Identities = 527/539 (97%), Gaps = 5/539 (0%)
Strand = Plus / Plus
Query: 5 gaattcactgtcatttgca--atacacatgatccccattgctgccagggcctggctgtaa 62
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgtcat---cagaatacacatgatccccattgctgccagggcctggctgtaa 261
Query: 63 ctgcttccggagctcacgagagccagcacaggtcactgctgtcattcagccgtcttctcc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctgcttccggagctcacgagagccagcacaggtcactgctgtcattcagccgtcttctcc 321
Query: 123 aggctgggactgtccctctgactcctgctccagtttcgtggagaatgctgtctgcctggg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aggctgggactgtccctctgactcctgctccagtttcgtggagaatgctgtctgcctggg 381
Query: 183 gcctgttcgtattggcttcatttgtcatttctgagccaacctctctgacttccatggctc 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 382 gcctgttcgtattggcttcatttgtcatttctgagccaacctctctgacttccatgactc 441
Query: 243 atgatgtccaccatcattctgtggacactggccctctgatcaggcttcgtcttaggcaca 302
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 442 atgatgtccaccatcattctgtggacactggccctctgaccaggcttcgtcttaggcaca 501
Query: 303 ggccacatcagacaccaacatatagtcctgtctgtgtgttctggggcacacctgggttct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggccacatcagacaccaacatatagtcctgtctgtgtgttctggggcacacctgggttct 561
Query: 363 tcctggtgtatcatagggtcttctttcccccatctccaaagcaggttataggtgttagag 422
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 562 tcctggtgtatcatagggtcgtctttcccccatctccaaagcaggttataggtgttggag 621
Query: 423 ccaggaggtacattaagaagtgactggtgacactttgaacctggtactcctactgctcca 482
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 622 ccatgaggtacattaagaagtgactggtgacactttgaacctggtactactactgctcca 681
Query: 483 cagtctcactgcagagccatagcagagctatatagcctgtggccagcactgacacctga 541
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cactctcactgcagagccatagcagagctatatagcctgtggccagcactgacacctga 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 943
Length adjustment: 10
Effective length of query: 534
Effective length of database: 933
Effective search space: 498222
Effective search space used: 498222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no427_d01.g1 MSMg01no427_d01.g1 CHROMAT_FILE:
MSMg01no427_d01.g1 PHD_FILE: MSMg01no427_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:59 2005
(610 letters)
>mm_chr2_180467871_180468880
Length = 1010
Score = 1164 bits (602), Expect = 0.0
Identities = 608/610 (99%)
Strand = Plus / Minus
Query: 1 actcacctggaaccaggttggcttcgaaatcacaaagatccacctgcctctgcctcccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 actcacctggaaccaggttggcttcgaaatcacaaagatccacctgcctctgcctcccga 899
Query: 61 gtgctgagattcaaggtgtgcactatcatcacctgacaaaccctttcttcttaatctgtt 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 898 gtgctgagattcaaggtgtgcactatcatcacctgacaaatcctttcttcttaatctgtt 839
Query: 121 tcttgtcattgttttgtcacagcagcaacagcagataaaacactgtcacaaacgcagcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tcttgtcattgttttgtcacagcagcaacagcagataaaacactgtcacaaacgcagcag 779
Query: 181 gtttgaggaacagctttggaacctagcattagtctacatctctactcggaccatcactgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gtttgaggaacagctttggaacctagcattagtctacatctctactcggaccatcactgc 719
Query: 241 tggactagaaggatggtccttgagagctcagggaagtttcctgaatgcaaagggggtgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tggactagaaggatggtccttgagagctcagggaagtttcctgaatgcaaagggggtgga 659
Query: 301 gccttacccgacctgggagccagcacccacagtgctgtaggtaaaggctctctcgctctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gccttacccgacctgggagccagcacccacagtgctgtaggtaaaggctctctcgctctc 599
Query: 361 ctgtactttctgggacagcagactggtcagggctggaaagtagacacctacaacaatcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ctgtactttctgggacagcagactggtcagggctggaaagtagacacctacaacaatcag 539
Query: 421 agattactgtcacagagtacccagtgacagcaagggagggctaaggcttggcttcctttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 agattactgtcacagagtacccagtgacagcaagggagggctaaggcttggcttcctttc 479
Query: 481 tgtgacctcactgagctttaggggatcagcagggctgggcttttggcaattttggggtaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tgtgacctcactgagctttaggggatcagcagggctgggcttttggcaattttggggtaa 419
Query: 541 tgaaccaaactaatttagaatgagcgttatacagagcgatgtaaaacatccccgggagag 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 418 tgaaccaaactaatttagaatgagagttatacagagcgatgtaaaacatccccgggagag 359
Query: 601 cttctgcttc 610
||||||||||
Sbjct: 358 cttctgcttc 349
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
