Query= MSMg01no427_f23.b1 MSMg01no427_f23.b1 CHROMAT_FILE:
MSMg01no427_f23.b1 PHD_FILE: MSMg01no427_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:14 2005
(489 letters)
>mm_chr2_64831888_64832776
Length = 889
Score = 932 bits (482), Expect = 0.0
Identities = 488/490 (99%), Gaps = 1/490 (0%)
Strand = Plus / Minus
Query: 1 gaaagcattattatcttcaaaaagcttatattagctctgaaaacaatttctctgtgtcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gaaagcattattatcttcaaaaagcttatattagctctgaaaacaatttctctgtgtcca 557
Query: 61 taaatattcattgggtcaagaaatcttgctgtgttgacagactatgtaattgacacagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 taaatattcattgggtcaagaaatcttgctgtgttgacagactatgtaattgacacagga 497
Query: 121 ttacagccatgtattgcgtgctattccacacgctgtgtagctactttttgaaataaatca 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 496 ttacagccatgtattgcgtgctattccacacactgtgtagctactttttgaaataaatca 437
Query: 181 agtggagctttgcaaatatggatcagaaagtaggattgtgcagttttgtacaaaaccaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agtggagctttgcaaatatggatcagaaagtaggattgtgcagttttgtacaaaaccaaa 377
Query: 241 acaatggggataatattttctgtttaggcaaagactgtgactgggtcttggttgtagaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 acaatggggataatattttctgtttaggcaaagactgtgactgggtcttggttgtagaat 317
Query: 301 caaatgctatcaaaagcgagcaagtgaaatcttaatacactagacacagctggtcctgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 caaatgctatcaaaagcgagcaagtgaaatcttaatacactagacacagctggtcctgta 257
Query: 361 gttgacagcttcctatatgctctctccaaaagtaactgaatgtcaacttgtgttactttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gttgacagcttcctatatgctctctccaaaagtaactgaatgtcaacttgtgttactttt 197
Query: 421 tttt-aaaaatattttttattacgtatttcctcaattacatttccaatgctatcccaaaa 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tttttaaaaatattttttattacgtatttcctcaattacatttccaatgctatcccaaaa 137
Query: 480 gtcccccata 489
||||||||||
Sbjct: 136 gtcccccata 127
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no427_f23.g1 MSMg01no427_f23.g1 CHROMAT_FILE:
MSMg01no427_f23.g1 PHD_FILE: MSMg01no427_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:14 2005
(484 letters)
>mm_chr2_64671017_64671900
Length = 884
Score = 907 bits (469), Expect = 0.0
Identities = 480/484 (99%)
Strand = Plus / Plus
Query: 1 cagagacagttaagccttaagagcataaggaaatattagaagccaataaaaaggccaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagacagttaagccttaagagcataaggaaatattagaagccaataaaaaggccaatc 260
Query: 61 aaattatgtacagtggccagctaacaaaactactgtttatagttctaagggactagaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaattatgtacagtggccagctaacaaaactactgtttatagttctaagggactagaaga 320
Query: 121 gcaagctttgtgctttctgaaatcatggtaaggagatttcaaggcagagattcttcacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaagctttgtgctttctgaaatcatggtaaggagatttcaaggcagagattcttcacct 380
Query: 181 gctggtgacaaaaatgaaagataggagaccaaaagaaggggaaaatccttctgtgtctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctggtgacaaaaatgaaagataggagaccaaaagaaggggaaaatccttctgtgtctgc 440
Query: 241 agcatcatgtagaggaaataggaagagctcaggacagacagacagtctttcctaaccaac 300
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 agcatcaggtagaggaaataggaagagctcgggacagacagacagtctttcctaaccaac 500
Query: 301 aaaaaccgctacctgtaagaaataacctcagagaaaagatcaaattcatggcccgctcca 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaaccgctacctgtaagaaatagcctcagagaaaagatcaaattcatggcccgctcca 560
Query: 361 taaagcatgggttagaaggaaagatgaagtaaagggcgaaagtgtaaaacccttttcaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaagcatgggttagaaggaaagatgaagtaaagggcgaaagtgtaaaacccttttcaca 620
Query: 421 acctcagagagaccaaagtctgtgcttcatgggtcctttcatctggacnaaatgactact 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 acctcagagagaccaaagtctgtgcttcatgggtcctttcatctggacaaaatgactact 680
Query: 481 aagg 484
||||
Sbjct: 681 aagg 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
